PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1351-1400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.4016 | 94.7971 | 79.3722 | 71.2035 | 911 | 50 | 885 | 230 | 217 | 94.3478 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2087 | 89.1575 | 93.3565 | 53.3541 | 3503 | 426 | 3499 | 249 | 235 | 94.3775 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | het | 94.9153 | 96.5517 | 93.3333 | 53.1250 | 28 | 1 | 28 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | * | 94.1176 | 93.0233 | 95.2381 | 54.8387 | 40 | 3 | 40 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9474 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9005 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.0843 | 92.8720 | 99.5267 | 21.0341 | 7570 | 581 | 7570 | 36 | 35 | 97.2222 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | het | 80.3742 | 96.7290 | 68.7500 | 68.2119 | 828 | 28 | 825 | 375 | 371 | 98.9333 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | * | 94.2413 | 93.2455 | 95.2586 | 34.8015 | 8421 | 610 | 8418 | 419 | 413 | 98.5680 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | homalt | 99.3561 | 98.9735 | 99.7416 | 60.7903 | 1157 | 12 | 1158 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | hetalt | 92.5754 | 89.1412 | 96.2848 | 45.0369 | 903 | 110 | 933 | 36 | 35 | 97.2222 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | het | 97.7459 | 97.7564 | 97.7354 | 59.1947 | 3050 | 70 | 3021 | 70 | 62 | 88.5714 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | * | 97.1394 | 96.3787 | 97.9123 | 57.5494 | 5110 | 192 | 5112 | 109 | 99 | 90.8257 | |
| rpoplin-dv42 | INDEL | D6_15 | * | homalt | 99.1567 | 98.5141 | 99.8078 | 51.4461 | 6232 | 94 | 6233 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | * | hetalt | 95.9844 | 92.8187 | 99.3737 | 29.7010 | 7587 | 587 | 7616 | 48 | 47 | 97.9167 | |
| rpoplin-dv42 | INDEL | D6_15 | * | het | 97.5270 | 99.0079 | 96.0896 | 61.5469 | 11477 | 115 | 11451 | 466 | 447 | 95.9227 | |
| rpoplin-dv42 | INDEL | D6_15 | * | * | 97.4536 | 96.9493 | 97.9633 | 52.8335 | 25296 | 796 | 25300 | 526 | 501 | 95.2471 | |
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.1176 | 19 | 0 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9898 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.4210 | 357 | 2 | 357 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.9645 | 50 | 2 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdup | het | 99.4935 | 99.2775 | 99.7106 | 94.2248 | 687 | 5 | 689 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | * | 99.4999 | 99.1840 | 99.8179 | 94.3988 | 1094 | 9 | 1096 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | homalt | 99.4879 | 99.7432 | 99.2340 | 80.1520 | 1165 | 3 | 1166 | 9 | 7 | 77.7778 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | hetalt | 95.7055 | 92.8571 | 98.7342 | 91.2804 | 78 | 6 | 78 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | het | 99.0134 | 99.1217 | 98.9054 | 80.0820 | 2257 | 20 | 2259 | 25 | 7 | 28.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | * | 99.0944 | 99.1782 | 99.0107 | 80.6593 | 3500 | 29 | 3503 | 35 | 15 | 42.8571 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.9670 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7448 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5000 | 95.9016 | 99.1525 | 95.4264 | 117 | 5 | 117 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.0926 | 97.2973 | 98.9011 | 95.4850 | 180 | 5 | 180 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.7952 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.4790 | 95.8678 | 99.1453 | 95.3828 | 116 | 5 | 116 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.0822 | 97.2826 | 98.8950 | 95.4061 | 179 | 5 | 179 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 94.3580 | 57 | 0 | 57 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.2477 | 95.4955 | 99.0654 | 95.2018 | 106 | 5 | 106 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9351 | 97.0760 | 98.8095 | 95.1431 | 166 | 5 | 166 | 2 | 1 | 50.0000 | |