PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 87.2727 | 24 | 1 | 24 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 83.7838 | 72.0930 | 100.0000 | 72.0000 | 62 | 24 | 63 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.0260 | 77.8947 | 96.0526 | 86.8056 | 74 | 21 | 73 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | homalt | 17.1429 | 100.0000 | 9.3750 | 81.1765 | 3 | 0 | 3 | 29 | 28 | 96.5517 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 91.7314 | 84.8065 | 99.8878 | 40.3479 | 1775 | 318 | 1781 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | het | 36.6885 | 59.5745 | 26.5060 | 84.0077 | 28 | 19 | 22 | 61 | 60 | 98.3607 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | * | 89.3838 | 84.2744 | 95.1528 | 48.3959 | 1806 | 337 | 1806 | 92 | 90 | 97.8261 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | hetalt | 91.5858 | 84.4776 | 100.0000 | 64.2417 | 283 | 52 | 290 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | het | 93.4882 | 90.9774 | 96.1415 | 59.6889 | 605 | 60 | 598 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | * | 93.7832 | 90.4507 | 97.3706 | 62.1815 | 1184 | 125 | 1185 | 32 | 29 | 90.6250 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | homalt | 96.6889 | 95.3876 | 98.0263 | 58.4131 | 1489 | 72 | 1490 | 30 | 28 | 93.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | hetalt | 91.5838 | 84.7950 | 99.5541 | 49.0051 | 1779 | 319 | 1786 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | het | 94.8292 | 93.8926 | 95.7847 | 65.3540 | 2552 | 166 | 2545 | 112 | 105 | 93.7500 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | * | 94.2741 | 91.2655 | 97.4879 | 59.7696 | 5820 | 557 | 5821 | 150 | 140 | 93.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 66.6667 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | het | 95.2381 | 100.0000 | 90.9091 | 47.6190 | 10 | 0 | 10 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | * | 94.1176 | 94.1176 | 94.1176 | 54.0541 | 16 | 1 | 16 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 92.1348 | 49 | 1 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.1786 | 44 | 5 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | het | 95.6989 | 96.7391 | 94.6809 | 94.0881 | 89 | 3 | 89 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | homalt | 97.6744 | 96.9231 | 98.4375 | 82.7260 | 126 | 4 | 126 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 72.8614 | 91 | 8 | 91 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | het | 96.0854 | 96.4286 | 95.7447 | 85.9911 | 270 | 10 | 270 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | * | 96.3403 | 95.6778 | 97.0120 | 83.7698 | 487 | 22 | 487 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4072 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.3731 | 14 | 0 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.4401 | 22 | 0 | 22 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.2766 | 14 | 0 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.3576 | 22 | 0 | 22 | 0 | 0 | ||