PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84901-84950 / 86044 show all
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.0827
79.4287
64.3238
52.6876
1092728301434179545860
73.6736
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
28.3070
0.0000
0.0000
26306661000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
69.0612
65.8068
72.6543
37.5809
1614983911674163014632
73.5121
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
76.0027
83.0403
70.0649
36.4124
864217651112747543440
72.3601
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
29.5818
0.0000
0.0000
20374849000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
76.9105
75.4795
78.3969
40.0251
54701777561415471192
77.0524
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.5930
11.9082
33.6634
40.2367
83614102201155
77.1144
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
27.3104
23.7037
32.2115
41.0765
3210367141109
77.3050
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
6.5173
0.0000
0.0000
32459000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
31.0023
26.7606
36.8421
38.3117
1952356046
76.6667
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.3676
96.1079
96.6286
54.1432
2437298724047839436
51.9666
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
96.6577
96.6080
96.7075
54.0122
1426950114216484156
32.2314
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.5742
0.0000
0.0000
101310000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.3849
98.2708
96.5148
54.3311
100021769831355280
78.8732
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
77.4069
76.4295
78.4096
44.8000
90762799923925441839
72.2877
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
81.2064
88.9071
74.7333
41.7707
5971745665522501626
72.2667
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
36.0348
0.0000
0.0000
538955000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
78.6812
70.0218
89.7846
52.4533
256710992584294213
72.4490
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
31.7791
28.9773
35.1807
45.7989
357875438807617
76.4560
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
43.1800
56.8831
34.7973
40.5025
219166412772591
76.5544
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
18.1538
0.0000
0.0000
118532000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
16.3986
10.1523
42.6230
80.1303
20177263526
74.2857
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
81.1375
80.9173
81.3588
37.8886
32997783365771561
72.7626
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
83.8258
90.7659
77.8716
35.7639
20742112305655476
72.6718
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
40.0433
0.0000
0.0000
185277000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
83.7423
78.1955
90.1361
42.6621
1040290106011685
73.2759
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
30.6011
28.0000
33.7349
46.7949
2154285549
89.0909
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
44.5986
69.2308
32.8947
40.6250
94255146
90.1961
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
20.4082
0.0000
0.0000
1039000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
22.6415
15.3846
42.8571
75.0000
211343
75.0000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5map_l100_m0_e0*
82.9849
83.7775
82.2072
86.7066
72314073015862
39.2405
anovak-vgINDELD1_5map_l100_m0_e0het
82.2817
86.8020
78.2090
87.2186
5137852414651
34.9315
anovak-vgINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
50.0000
00010
0.0000
anovak-vgINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000