PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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84501-84550 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4648 | 98.0952 | 98.8372 | 65.8730 | 515 | 10 | 510 | 6 | 3 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.6904 | 70.9091 | 61.1872 | 88.2131 | 117 | 48 | 134 | 85 | 29 | 34.1176 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.5316 | 65.3226 | 56.3953 | 87.8359 | 81 | 43 | 97 | 75 | 22 | 29.3333 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0165 | 87.8049 | 78.7234 | 89.4144 | 36 | 5 | 37 | 10 | 7 | 70.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | het | 77.7080 | 80.2817 | 75.2941 | 89.6341 | 57 | 14 | 64 | 21 | 11 | 52.3810 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.7143 | 83.3333 | 88.2353 | 86.8726 | 30 | 6 | 30 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | * | 76.3524 | 73.4375 | 79.5082 | 88.8584 | 94 | 34 | 97 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | het | 78.0093 | 80.2817 | 75.8621 | 89.5558 | 57 | 14 | 66 | 21 | 11 | 52.3810 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 6 | 14 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | homalt | 86.1111 | 83.7838 | 88.5714 | 86.6412 | 31 | 6 | 31 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | * | 75.3769 | 75.0000 | 75.7576 | 93.5421 | 24 | 8 | 25 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | * | 80.4282 | 79.4521 | 81.4286 | 91.4005 | 58 | 15 | 57 | 13 | 8 | 61.5385 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | het | 80.3240 | 87.1795 | 74.4681 | 92.3948 | 34 | 5 | 35 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 2 | 6 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | homalt | 89.7959 | 84.6154 | 95.6522 | 88.2653 | 22 | 4 | 22 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | * | 79.8890 | 78.0488 | 81.8182 | 91.2201 | 64 | 18 | 63 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | het | 79.4212 | 82.6087 | 76.4706 | 92.2844 | 38 | 8 | 39 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 2 | 6 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.8889 | 85.7143 | 92.3077 | 87.9630 | 24 | 4 | 24 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | het | 79.8362 | 82.9787 | 76.9231 | 92.2619 | 39 | 8 | 40 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 22.2222 | 0.0000 | 0.0000 | 2 | 7 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | homalt | 89.2857 | 86.2069 | 92.5926 | 87.6147 | 25 | 4 | 25 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | * | 84.5070 | 83.3333 | 85.7143 | 97.8125 | 5 | 1 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | * | 77.7778 | 77.7778 | 77.7778 | 96.4000 | 14 | 4 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | het | 78.2609 | 81.8182 | 75.0000 | 96.9620 | 9 | 2 | 9 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | * | 78.6127 | 77.2727 | 80.0000 | 96.3636 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2149 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_siren | * | 73.2509 | 67.3870 | 80.2326 | 79.8971 | 343 | 166 | 345 | 85 | 60 | 70.5882 | |
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| anovak-vg | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 25.2525 | 0.0000 | 0.0000 | 25 | 74 | 0 | 0 | 0 | ||