PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1251-1300 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 24.4075 | 0.0000 | 0.0000 | 1967 | 6092 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 59.5457 | 53.6378 | 66.9161 | 58.0784 | 2020 | 1746 | 2146 | 1061 | 754 | 71.0650 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.2492 | 43.6456 | 56.5037 | 39.7780 | 4128 | 5330 | 4231 | 3257 | 2430 | 74.6085 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.9042 | 65.3860 | 55.2704 | 39.0162 | 1787 | 946 | 3015 | 2440 | 1867 | 76.5164 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 25.3353 | 0.0000 | 0.0000 | 1209 | 3563 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 58.8731 | 57.9621 | 59.8131 | 41.7312 | 1132 | 821 | 1216 | 817 | 563 | 68.9106 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.3933 | 12.4471 | 35.2174 | 39.3140 | 147 | 1034 | 162 | 298 | 265 | 88.9262 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 26.2530 | 22.2973 | 31.9149 | 42.5829 | 33 | 115 | 105 | 224 | 205 | 91.5179 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 7.4541 | 0.0000 | 0.0000 | 65 | 807 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.8169 | 30.4348 | 43.5115 | 29.1892 | 49 | 112 | 57 | 74 | 60 | 81.0811 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4268 | 75.9398 | 85.4772 | 80.3586 | 202 | 64 | 206 | 35 | 25 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.2814 | 84.5161 | 86.0606 | 80.3571 | 131 | 24 | 142 | 23 | 16 | 69.5652 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 21.6216 | 0.0000 | 0.0000 | 8 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 84.6703 | 85.1351 | 84.2105 | 80.3618 | 63 | 11 | 64 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.0833 | 43.8596 | 64.1026 | 99.3572 | 25 | 32 | 25 | 14 | 11 | 78.5714 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 1 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.8696 | 100.0000 | 43.7500 | 99.4686 | 6 | 0 | 7 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 61.2783 | 55.3295 | 68.6604 | 44.0399 | 2040 | 1647 | 1963 | 896 | 675 | 75.3348 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 69.3130 | 73.8369 | 65.3114 | 41.5571 | 1222 | 433 | 1510 | 802 | 609 | 75.9352 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 31.9797 | 0.0000 | 0.0000 | 378 | 804 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.7080 | 51.7647 | 82.8154 | 52.5585 | 440 | 410 | 453 | 94 | 66 | 70.2128 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.0890 | 20.6844 | 39.2387 | 39.7707 | 272 | 1043 | 268 | 415 | 363 | 87.4699 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 39.5158 | 40.0000 | 39.0432 | 37.8119 | 132 | 198 | 253 | 395 | 347 | 87.8481 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 16.1412 | 0.0000 | 0.0000 | 128 | 665 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.9091 | 6.2500 | 42.8571 | 61.9565 | 12 | 180 | 15 | 20 | 16 | 80.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 64.3273 | 59.5954 | 69.8756 | 29.2072 | 1031 | 699 | 1067 | 460 | 370 | 80.4348 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.4560 | 79.2319 | 66.7478 | 27.2137 | 557 | 146 | 823 | 410 | 336 | 81.9512 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 40.5822 | 0.0000 | 0.0000 | 237 | 347 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 65.0593 | 53.4989 | 82.9932 | 36.5011 | 237 | 206 | 244 | 50 | 34 | 68.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 22.4849 | 18.3099 | 29.1262 | 29.9320 | 26 | 116 | 30 | 73 | 61 | 83.5616 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5234 | 37.5000 | 28.7129 | 27.3381 | 9 | 15 | 29 | 72 | 60 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.4948 | 0.0000 | 0.0000 | 16 | 81 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 8.6957 | 4.7619 | 50.0000 | 75.0000 | 1 | 20 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | het | 81.4578 | 81.6667 | 81.2500 | 89.3155 | 49 | 11 | 52 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 21.0526 | 0.0000 | 0.0000 | 4 | 15 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | * | 69.8276 | 62.7907 | 78.6408 | 85.3172 | 162 | 96 | 162 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | homalt | 82.8729 | 75.0000 | 92.5926 | 84.7025 | 48 | 16 | 50 | 4 | 4 | 100.0000 | |