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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
851-900 / 86044 show all
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
20.6568
0.0000
0.0000
195749000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
67.4506
68.3983
66.5289
66.7811
316146322162105
64.8148
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.4634
56.6917
58.2564
53.1385
7545761009723533
73.7206
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
16.7981
0.0000
0.0000
2771372000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
70.6515
66.8199
74.9493
62.1061
727361739247164
66.3968
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
16.4164
0.0000
0.0000
3171614000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.6464
66.6133
75.1993
63.7444
832417849280193
68.9286
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
55.3043
53.2020
57.5796
52.8812
324285452333230
69.0691
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
19.7704
0.0000
0.0000
155629000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
69.6845
73.4336
66.2996
51.5475
293106301153102
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
28.7100
20.4082
48.3974
46.2069
150585151161125
77.6398
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
30.5882
23.0769
45.3488
45.7413
39130789474
78.7234
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
9.1116
0.0000
0.0000
40399000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
53.9587
55.9055
52.1429
46.7681
7156736751
76.1194
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
79.3685
71.2644
89.5522
70.7424
62256073
42.8571
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
83.8725
78.8462
89.5833
67.1233
41114352
40.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
8.3333
0.0000
0.0000
111000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
88.1971
86.9565
89.4737
77.1084
2031721
50.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
49.6562
36.7647
76.4706
96.4620
25432687
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
48.2759
31.8182
100.0000
91.5730
14301500
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
09000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
64.7059
73.3333
57.8947
97.5734
1141187
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.7848
41.9187
67.7249
51.1628
402557384183140
76.5027
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
55.4070
49.8753
62.3188
47.9245
200201258156121
77.5641
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
22.5610
0.0000
0.0000
74254000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
66.4196
55.6522
82.3529
58.1967
1281021262719
70.3704
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
26.5368
18.6688
45.8678
43.7209
115501111131110
83.9695
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
11.4286
0.0000
0.0000
40310000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
44.0640
31.3725
74.0000
55.3571
3270371312
92.3077
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
54.9995
46.4968
67.3077
47.2081
7384703426
76.4706
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
57.5634
52.4590
63.7681
43.4426
3229442520
80.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
25.4902
0.0000
0.0000
1338000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
67.7209
62.2222
74.2857
53.3333
28172696
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
29.8913
21.7391
47.8261
39.4737
103611129
75.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
40.0000
50.0000
33.3333
42.3077
445107
70.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
025000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
57.1429
46.1538
75.0000
33.3333
67622
100.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000