PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1001-1050 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | homalt | 99.4792 | 98.9637 | 100.0000 | 91.0664 | 191 | 2 | 191 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | het | 92.6096 | 86.5385 | 99.5968 | 76.3020 | 495 | 77 | 494 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7941 | 99.6372 | 99.9515 | 70.3259 | 4119 | 15 | 4123 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | * | 98.6899 | 97.5830 | 99.8222 | 64.8925 | 11224 | 278 | 11226 | 20 | 2 | 10.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7915 | 99.6326 | 99.9509 | 70.3193 | 4068 | 15 | 4069 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | het | 98.0436 | 96.4010 | 99.7431 | 60.6061 | 6991 | 261 | 6989 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7842 | 99.6199 | 99.9492 | 67.6001 | 3931 | 15 | 3932 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | het | 97.9852 | 96.2712 | 99.7612 | 57.9109 | 6687 | 259 | 6685 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | * | 98.6367 | 97.4707 | 99.8310 | 62.1132 | 10636 | 276 | 10635 | 18 | 2 | 11.1111 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | het | 98.4798 | 97.2993 | 99.6893 | 57.3735 | 10268 | 285 | 10267 | 32 | 2 | 6.2500 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | * | 98.9559 | 98.1449 | 99.7803 | 61.1285 | 16348 | 309 | 16353 | 36 | 5 | 13.8889 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7836 | 99.6344 | 99.9333 | 66.1132 | 5995 | 22 | 5996 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | het | 98.4778 | 97.2706 | 99.7153 | 57.2310 | 10157 | 285 | 10156 | 29 | 2 | 6.8966 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | * | 98.9542 | 98.1260 | 99.7965 | 61.0321 | 16180 | 309 | 16180 | 33 | 5 | 15.1515 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7778 | 99.6246 | 99.9315 | 63.2977 | 5838 | 22 | 5839 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | * | 98.9355 | 98.0707 | 99.8157 | 58.1812 | 15707 | 309 | 15707 | 29 | 5 | 17.2414 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | * | 99.1807 | 98.6394 | 99.7280 | 56.7507 | 24939 | 344 | 24934 | 68 | 5 | 7.3529 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8261 | 99.7070 | 99.9456 | 61.2864 | 9187 | 27 | 9186 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 66.0870 | 39 | 3 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | het | 98.8114 | 98.0098 | 99.6262 | 53.3646 | 15463 | 314 | 15459 | 58 | 2 | 3.4483 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | * | 99.1825 | 98.6258 | 99.7454 | 56.6822 | 24689 | 344 | 24684 | 63 | 5 | 7.9365 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7125 | 99.9446 | 58.6136 | 9017 | 26 | 9016 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | het | 98.7963 | 97.9633 | 99.6436 | 50.7412 | 15103 | 314 | 15098 | 54 | 2 | 3.7037 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | * | 99.1748 | 98.6001 | 99.7563 | 54.0248 | 24158 | 343 | 24152 | 59 | 5 | 8.4746 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m0_e0 | homalt | 99.7656 | 99.6100 | 99.9217 | 59.8070 | 3831 | 15 | 3829 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||