PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1801-1850 / 86044 show all
jpowers-varprowlINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
93.7500
50500
jpowers-varprowlINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
93.1818
60600
jpowers-varprowlINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
93.3333
60600
jpowers-varprowlINDELI16_PLUSHG002compoundhethomalt
7.1429
100.0000
3.7037
66.6667
3037877
98.7179
ltrigg-rtg1INDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
87.2340
60600
ltrigg-rtg1INDELI6_15map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
91.0256
80700
ltrigg-rtg1INDELI6_15map_l125_m1_e0homalt
100.0000
100.0000
100.0000
86.1111
1501500
ltrigg-rtg1INDELI6_15map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.3077
80700
ltrigg-rtg1INDELI6_15map_l125_m2_e0homalt
100.0000
100.0000
100.0000
88.3721
1501500
ltrigg-rtg1INDELI6_15map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
92.4731
80700
ltrigg-rtg1INDELI6_15map_l125_m2_e1homalt
100.0000
100.0000
100.0000
88.8060
1501500
ltrigg-rtg1INDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
89.1892
40400
ltrigg-rtg1INDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
95.3125
30300
ltrigg-rtg1INDELI6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
91.1392
70700
ltrigg-rtg1INDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
95.8904
30300
ltrigg-rtg1INDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
92.7835
70700
ltrigg-rtg1INDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.0000
30300
ltrigg-rtg1INDELI6_15map_l150_m2_e1homalt
100.0000
100.0000
100.0000
92.1569
80800
ltrigg-rtg1INDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.1132
10100
ltrigg-rtg1INDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
95.0000
10100
ltrigg-rtg1INDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
93.1818
30300
ltrigg-rtg1INDELI6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
93.8776
30300
ltrigg-rtg1INDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
94.1176
30300
ltrigg-rtg1INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
ltrigg-rtg1INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
ltrigg-rtg1INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
40.0000
30300
ltrigg-rtg1INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
ltrigg-rtg1SNP*func_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
30400
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
72.2222
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.6835
70600
ltrigg-rtg1SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
63.6364
1601600
ltrigg-rtg1SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
64.0351
4104100
ltrigg-rtg1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
ltrigg-rtg1SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
65.3226
4304300
ltrigg-rtg1SNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
71.8750
90900
ltrigg-rtg1SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
63.4146
3003000
ltrigg-rtg1SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
67.3913
3003000
ltrigg-rtg1SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
67.3913
3003000
ltrigg-rtg1SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.3636
30300
ltrigg-rtg1SNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
68.7500
2002000
ltrigg-rtg1SNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
70.5882
2002000