PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1304 1305 1306 1307 1308 1309 1310 1311 1312 ... 1720 1721 » 65351-65400 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.0588	1	0	1	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.7839	96.9412	98.6414	47.7167	19966	630	19967	275	271	98.5455
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6091	98.6593	98.5590	59.0674	7285	99	7250	106	103	97.1698
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.4972	93.5639	99.6204	24.2463	7574	521	7610	29	29	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.5527	99.8046	97.3318	50.7832	5107	10	5107	140	139	99.2857
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.2425	97.6560	98.8360	46.5565	17831	428	17832	210	208	99.0476
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.8484	99.0268	98.6706	57.0089	6614	65	6606	89	88	98.8764
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1401	94.7708	99.6309	23.4581	6470	357	6479	24	24	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.9267	99.8738	97.9975	50.0103	4747	6	4747	97	96	98.9691
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.8814	97.0742	98.7022	53.8225	21599	651	21600	284	276	97.1831
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.6756	98.7256	98.6257	64.1796	8289	107	8253	115	108	93.9130
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4599	93.4908	99.6237	26.2417	7641	532	7678	29	29	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6771	99.7888	97.5899	57.2270	5669	12	5669	140	139	99.2857
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1915	97.4975	98.8955	61.4377	30622	786	30622	342	309	90.3509
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8269	98.7352	98.9188	69.0820	13583	174	13540	148	116	78.3784
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4888	93.5852	99.5783	30.8129	8695	596	8738	37	37	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9740	99.8086	98.1532	63.5791	8344	16	8344	157	156	99.3631
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.4981	97.9421	99.0604	41.3577	24035	505	24037	228	220	96.4912
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.0868	99.0968	99.0767	50.8276	10313	94	10302	96	89	92.7083
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.7472	94.1475	99.4946	23.8423	6483	403	6496	33	33	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2664	99.8896	98.6509	37.0615	7239	8	7239	99	98	98.9899
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	81.2423	74.6055	89.1753	53.3280	520	177	519	63	62	98.4127
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	82.2326	82.2222	82.2430	78.7698	111	24	88	19	18	94.7368
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	81.9280	69.6538	99.4536	27.2366	342	149	364	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	74.4444	94.3662	61.4679	54.5833	67	4	67	42	42	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7868	99.6845	99.8894	55.8752	25279	80	25282	28	15	53.5714
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8103	99.7360	99.8847	56.3092	14731	39	14733	17	4	23.5294
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.0580	91.2409	99.2084	70.4829	375	36	376	3	3	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9361	99.9509	99.9214	54.3780	10173	5	10173	8	8	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.9992	1	0	1	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9919	1	0	1	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5149	99.3263	99.7043	51.4820	11795	80	11800	35	21	60.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6201	99.5533	99.6870	54.4597	6686	30	6688	21	7	33.3333
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2315	96.7180	99.7931	31.3447	1444	49	1447	3	3	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8366	99.9727	99.7008	51.3048	3665	1	3665	11	11	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.6205	96.5909	98.6722	61.1039	1190	42	1189	16	15	93.7500
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	97.2306	96.8831	97.5806	79.1129	373	12	363	9	8	88.8889
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.4161	95.5385	99.3691	21.9212	621	29	630	4	4	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9899	99.4924	98.4925	60.5941	196	1	196	3	3	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge