PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61401-61450 / 86044 show all | |||||||||||||||
jli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 66.6667 | 14 | 0 | 14 | 1 | 1 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m0_e0 | homalt | 99.6776 | 99.4340 | 99.9224 | 57.9039 | 7730 | 44 | 7730 | 6 | 6 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m1_e0 | * | 99.4974 | 99.3240 | 99.6713 | 60.4603 | 47607 | 324 | 47605 | 157 | 50 | 31.8471 | |
jli-custom | SNP | ti | map_l100_m1_e0 | het | 99.3190 | 99.1250 | 99.5138 | 62.5391 | 29680 | 262 | 29678 | 145 | 38 | 26.2069 | |
jli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 98.3051 | 100.0000 | 96.6667 | 70.5882 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m1_e0 | homalt | 99.7965 | 99.6548 | 99.9386 | 56.4067 | 17898 | 62 | 17898 | 11 | 11 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m2_e0 | * | 99.4978 | 99.3362 | 99.6598 | 62.5143 | 48636 | 325 | 48634 | 166 | 50 | 30.1205 | |
jli-custom | SNP | ti | map_l100_m2_e0 | het | 99.3179 | 99.1411 | 99.4953 | 64.3096 | 30359 | 263 | 30357 | 154 | 38 | 24.6753 | |
jli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 72.8070 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m2_e0 | homalt | 99.8004 | 99.6614 | 99.9398 | 59.0453 | 18247 | 62 | 18247 | 11 | 11 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m2_e1 | * | 99.5011 | 99.3412 | 99.6614 | 62.5257 | 49159 | 326 | 49157 | 167 | 50 | 29.9401 | |
jli-custom | SNP | ti | map_l100_m2_e1 | het | 99.3237 | 99.1505 | 99.4976 | 64.3340 | 30697 | 263 | 30695 | 155 | 38 | 24.5161 | |
jli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 72.1739 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
jli-custom | SNP | ti | map_l100_m2_e1 | homalt | 99.7997 | 99.6593 | 99.9404 | 59.0260 | 18431 | 63 | 18431 | 11 | 11 | 100.0000 | |
jli-custom | SNP | ti | map_l125_m0_e0 | * | 98.9692 | 98.5504 | 99.3915 | 69.4510 | 12577 | 185 | 12577 | 77 | 30 | 38.9610 | |
jli-custom | SNP | ti | map_l125_m0_e0 | het | 98.6256 | 98.1363 | 99.1199 | 71.4709 | 8109 | 154 | 8109 | 72 | 25 | 34.7222 | |
jli-custom | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 8 | 0 | 8 | 0 | 0 | ||
jli-custom | SNP | ti | map_l125_m0_e0 | homalt | 99.5980 | 99.3097 | 99.8880 | 64.8868 | 4460 | 31 | 4460 | 5 | 5 | 100.0000 | |
jli-custom | SNP | ti | map_l125_m1_e0 | * | 99.3574 | 99.1001 | 99.6162 | 66.6526 | 29071 | 264 | 29069 | 112 | 41 | 36.6071 | |
jli-custom | SNP | ti | map_l125_m1_e0 | het | 99.1158 | 98.8065 | 99.4270 | 68.8246 | 18048 | 218 | 18046 | 104 | 33 | 31.7308 | |
jli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5676 | 24 | 0 | 24 | 0 | 0 | ||
jli-custom | SNP | ti | map_l125_m1_e0 | homalt | 99.7551 | 99.5835 | 99.9273 | 62.3216 | 10999 | 46 | 10999 | 8 | 8 | 100.0000 | |
jli-custom | SNP | ti | map_l125_m2_e0 | * | 99.3639 | 99.1176 | 99.6114 | 68.7298 | 29991 | 267 | 29989 | 117 | 41 | 35.0427 | |
jli-custom | SNP | ti | map_l125_m2_e0 | het | 99.1286 | 98.8398 | 99.4191 | 70.5575 | 18657 | 219 | 18655 | 109 | 33 | 30.2752 | |
jli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6264 | 24 | 0 | 24 | 0 | 0 | ||
jli-custom | SNP | ti | map_l125_m2_e0 | homalt | 99.7530 | 99.5774 | 99.9293 | 65.1271 | 11310 | 48 | 11310 | 8 | 8 | 100.0000 | |
jli-custom | SNP | ti | map_l125_m2_e1 | * | 99.3704 | 99.1266 | 99.6153 | 68.7864 | 30302 | 267 | 30300 | 117 | 41 | 35.0427 | |
jli-custom | SNP | ti | map_l125_m2_e1 | het | 99.1383 | 98.8526 | 99.4256 | 70.6228 | 18868 | 219 | 18866 | 109 | 33 | 30.2752 | |
jli-custom | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6264 | 24 | 0 | 24 | 0 | 0 | ||
jli-custom | SNP | ti | map_l125_m2_e1 | homalt | 99.7552 | 99.5811 | 99.9299 | 65.1529 | 11410 | 48 | 11410 | 8 | 8 | 100.0000 | |
jli-custom | SNP | ti | map_l150_m0_e0 | * | 98.8029 | 98.1682 | 99.4459 | 75.0426 | 7717 | 144 | 7717 | 43 | 19 | 44.1860 | |
jli-custom | SNP | ti | map_l150_m0_e0 | het | 98.3675 | 97.5280 | 99.2216 | 76.7991 | 4971 | 126 | 4971 | 39 | 15 | 38.4615 | |
jli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.3636 | 3 | 0 | 3 | 0 | 0 | ||
jli-custom | SNP | ti | map_l150_m0_e0 | homalt | 99.6006 | 99.3481 | 99.8544 | 71.0140 | 2743 | 18 | 2743 | 4 | 4 | 100.0000 | |
jli-custom | SNP | ti | map_l150_m1_e0 | * | 99.2008 | 98.8636 | 99.5403 | 71.1664 | 19488 | 224 | 19486 | 90 | 35 | 38.8889 | |
jli-custom | SNP | ti | map_l150_m1_e0 | het | 98.8959 | 98.4802 | 99.3151 | 73.0550 | 12182 | 188 | 12180 | 84 | 29 | 34.5238 | |
jli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 15 | 0 | 15 | 0 | 0 | ||
jli-custom | SNP | ti | map_l150_m1_e0 | homalt | 99.7128 | 99.5087 | 99.9178 | 67.3088 | 7291 | 36 | 7291 | 6 | 6 | 100.0000 | |
jli-custom | SNP | ti | map_l150_m2_e0 | * | 99.2101 | 98.8933 | 99.5289 | 73.1343 | 20285 | 227 | 20283 | 96 | 36 | 37.5000 | |
jli-custom | SNP | ti | map_l150_m2_e0 | het | 98.9128 | 98.5327 | 99.2958 | 74.7496 | 12692 | 189 | 12690 | 90 | 30 | 33.3333 | |
jli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
jli-custom | SNP | ti | map_l150_m2_e0 | homalt | 99.7105 | 99.5011 | 99.9209 | 69.8737 | 7578 | 38 | 7578 | 6 | 6 | 100.0000 | |
jli-custom | SNP | ti | map_l150_m2_e1 | * | 99.2158 | 98.9046 | 99.5289 | 73.2251 | 20496 | 227 | 20494 | 97 | 36 | 37.1134 | |
jli-custom | SNP | ti | map_l150_m2_e1 | het | 98.9202 | 98.5478 | 99.2954 | 74.8618 | 12826 | 189 | 12824 | 91 | 30 | 32.9670 | |
jli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
jli-custom | SNP | ti | map_l150_m2_e1 | homalt | 99.7134 | 99.5060 | 99.9217 | 69.9097 | 7655 | 38 | 7655 | 6 | 6 | 100.0000 | |
jli-custom | SNP | ti | map_l250_m0_e0 | * | 97.5483 | 95.8394 | 99.3192 | 90.4686 | 1313 | 57 | 1313 | 9 | 7 | 77.7778 | |
jli-custom | SNP | ti | map_l250_m0_e0 | het | 96.7636 | 94.4325 | 99.2126 | 90.7809 | 882 | 52 | 882 | 7 | 5 | 71.4286 | |
jli-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jli-custom | SNP | ti | map_l250_m0_e0 | homalt | 99.1945 | 98.8532 | 99.5381 | 89.7296 | 431 | 5 | 431 | 2 | 2 | 100.0000 |