PrecisionFDA
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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85251-85300 / 86044 show all
gduggal-bwafbSNPtimap_siren*
99.3101
99.3981
99.2222
57.2359
9975160499755782145
18.5422
egarrison-hhgaSNPtimap_siren*
99.6715
99.4669
99.8769
52.8764
998205359982112354
43.9024
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143
hfeng-pmm1SNPtimap_siren*
99.7016
99.5376
99.8660
52.2018
998914649987813442
31.3433
ckim-dragenSNPtimap_siren*
99.0224
99.5177
98.5321
56.8522
99871484998801488162
10.8871
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
jli-customSNPtimap_siren*
99.6599
99.5825
99.7375
51.1882
999364199992926366
25.0951
dgrover-gatkSNPtimap_siren*
99.6765
99.6403
99.7128
55.1320
999943619997928868
23.6111
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
bgallagher-sentieonSNPtimap_siren*
99.6181
99.6801
99.5561
54.0168
10003432110001944666
14.7982
hfeng-pmm3SNPtimap_siren*
99.7701
99.6881
99.8523
52.8057
10004231310002714825
16.8919
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7884
98.3155
99.2658
69.8244
928581591106946791672
84.9558
ckim-isaacSNP*map_siren*
84.8645
73.7800
99.8686
51.5315
1078873834110790014241
28.8732
ckim-vqsrSNP*map_siren*
85.1088
74.3093
99.5811
71.1680
1086613756710864145731
6.7834
mlin-fermikitSNP*map_siren*
83.3638
74.6157
94.4357
47.0930
1091093711910909464285503
85.6098
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
gduggal-bwavardINDEL**homalt
93.4187
87.7664
99.8491
40.7725
1098591531310921416592
55.7576
jpowers-varprowlINDEL**homalt
92.2554
87.3566
97.7363
45.3284
1093461582610923325302235
88.3399
gduggal-snapplatINDELI1_5**
77.0401
71.8692
83.0128
69.8058
10828142383109381223831242
5.5489
ciseli-customINDEL**homalt
84.6742
88.5829
81.0959
56.4739
110881142911106442579222639
87.7753
gduggal-bwaplatINDEL**homalt
94.8233
90.5786
99.4855
59.5744
11337911793113311586499
85.1536
gduggal-snapvardINDELD1_5*het
88.4948
98.0268
80.6523
58.4318
8584417281159492781521843
78.5296
ckim-isaacINDEL**homalt
96.2069
93.1918
99.4236
48.6128
1166508522116601676381
56.3609
gduggal-snapfbINDEL**homalt
94.4791
93.5105
95.4679
58.3050
117049812311709955593925
70.6062
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
gduggal-bwaplatSNP*map_siren*
90.0933
82.3317
99.4705
71.0074
12039225836120427641167
26.0530
eyeh-varpipeINDEL**homalt
92.5348
96.0734
89.2476
55.4307
12025749151211091459114265
97.7657
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.9320
73.6508
76.2585
70.2157
69561248861220353799331398
82.6415
mlin-fermikitINDEL**homalt
97.5803
98.1713
96.9963
56.8203
122883228912277438023715
97.7117
gduggal-bwafbINDEL**homalt
98.0353
98.2688
97.8029
56.6087
123005216712299127632706
97.9370
qzeng-customINDEL**homalt
98.3570
98.7793
97.9383
51.6092
123644152812365526031560
59.9308
ndellapenna-hhgaINDEL**homalt
98.8395
98.9790
98.7005
54.9139
123894127812387716311021
62.5996
egarrison-hhgaINDEL**homalt
98.9696
99.0301
98.9091
55.3233
12395812141239391367838
61.3021
ltrigg-rtg2INDEL**homalt
99.5524
99.2554
99.8512
52.3128
124239932124115185162
87.5676
rpoplin-dv42INDEL**homalt
99.5190
99.2498
99.7896
55.3247
124233939124240262239
91.2214
ltrigg-rtg1INDEL**homalt
99.6060
99.3824
99.8305
54.1259
124398773124268211185
87.6777
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
cchapple-customINDEL**homalt
99.5578
99.7843
99.3323
55.6558
124902270124673838810
96.6587
ckim-dragenINDEL**homalt
99.2636
99.8234
98.7101
59.5235
12495122112488716321607
98.4681
hfeng-pmm1INDEL**homalt
99.6836
99.7787
99.5886
55.4406
124895277124903516501
97.0930
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
hfeng-pmm3INDEL**homalt
99.7023
99.7971
99.6077
55.0410
124918254124928492475
96.5447
hfeng-pmm2INDEL**homalt
99.6594
99.8043
99.5149
55.8756
124927245124935609588
96.5517
jli-customINDEL**homalt
99.7041
99.8538
99.5548
57.2311
124989183124999559535
95.7066
ckim-vqsrINDEL**homalt
99.5675
99.8658
99.2711
58.9429
125004168125017918901
98.1481
jmaeng-gatkINDEL**homalt
99.5485
99.8690
99.2301
59.0290
125008164125021970941
97.0103
raldana-dualsentieonINDEL**homalt
99.5287
99.8738
99.1860
57.6626
12501415812502310261009
98.3431
ckim-gatkINDEL**homalt
99.5712
99.8778
99.2664
58.9388
125019153125032924905
97.9437
astatham-gatkINDEL**homalt
99.5755
99.8874
99.2657
58.8575
125031141125041925908
98.1622
dgrover-gatkINDEL**homalt
99.5819
99.8906
99.2752
59.0938
125035137125045913890
97.4808