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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
84501-84550 / 86044 show all | |||||||||||||||
gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.5155 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.5155 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.6842 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.1228 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 99.1667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 99.1736 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
hfeng-pmm1 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.8780 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3452 | 19 | 0 | 19 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I1_5 | * | homalt | 99.7725 | 99.7799 | 99.7651 | 52.5960 | 60295 | 133 | 60299 | 142 | 137 | 96.4789 | |
hfeng-pmm1 | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.8736 | 99.8514 | 52.0252 | 13431 | 17 | 13435 | 20 | 17 | 85.0000 | |
hfeng-pmm1 | INDEL | I1_5 | HG002compoundhet | homalt | 83.5249 | 99.3921 | 72.0264 | 83.4186 | 327 | 2 | 327 | 127 | 126 | 99.2126 | |
hfeng-pmm1 | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8140 | 119 | 0 | 119 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.0018 | 97.1731 | 96.8310 | 69.5931 | 275 | 8 | 275 | 9 | 9 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5198 | 99.6042 | 99.4355 | 71.4918 | 3523 | 14 | 3523 | 20 | 20 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2411 | 99.0960 | 99.3867 | 70.6527 | 3727 | 34 | 3727 | 23 | 22 | 95.6522 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2519 | 99.5000 | 99.0050 | 61.8596 | 199 | 1 | 199 | 2 | 2 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 74.8818 | 478 | 0 | 478 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 78.0735 | 346 | 0 | 346 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.4634 | 91.4634 | 91.4634 | 76.4368 | 75 | 7 | 75 | 7 | 7 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8395 | 97.6888 | 97.9907 | 65.9474 | 634 | 15 | 634 | 13 | 13 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7719 | 98.5989 | 98.9455 | 64.4153 | 563 | 8 | 563 | 6 | 6 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6837 | 98.6418 | 98.7256 | 72.6343 | 1162 | 16 | 1162 | 15 | 15 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2411 | 99.0960 | 99.3867 | 70.6527 | 3727 | 34 | 3727 | 23 | 22 | 95.6522 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5579 | 99.8227 | 99.2945 | 72.0827 | 563 | 1 | 563 | 4 | 4 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8968 | 100.0000 | 99.7938 | 63.6432 | 968 | 0 | 968 | 2 | 2 | 100.0000 | |
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4843 | 99.6244 | 99.3446 | 67.0980 | 1061 | 4 | 1061 | 7 | 7 | 100.0000 |