PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1401-1450 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.2963 | 100.0000 | 92.8571 | 97.1074 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | het | 92.0635 | 87.8788 | 96.6667 | 97.5227 | 29 | 4 | 29 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.8000 | 99.5968 | 98.0159 | 88.3710 | 247 | 1 | 247 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 98.1081 | 7 | 1 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.9860 | 97.7011 | 98.2726 | 88.3079 | 510 | 12 | 512 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9733 | 99.5868 | 98.3673 | 88.4051 | 241 | 1 | 241 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.3333 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0541 | 97.8599 | 98.2490 | 88.2809 | 503 | 11 | 505 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9107 | 99.5614 | 98.2684 | 87.7971 | 227 | 1 | 227 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.1538 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9249 | 97.7178 | 98.1328 | 87.6884 | 471 | 11 | 473 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1894 | 98.1869 | 98.1919 | 88.2765 | 704 | 13 | 706 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.7427 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2766 | 97.0297 | 97.5248 | 90.6741 | 196 | 6 | 197 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.9275 | 97.9239 | 97.9310 | 91.1206 | 283 | 6 | 284 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0629 | 99.4624 | 98.6667 | 86.1470 | 370 | 2 | 370 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.7742 | 14 | 1 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1180 | 98.0519 | 98.1842 | 86.0452 | 755 | 15 | 757 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4031 | 98.4443 | 98.3621 | 86.6144 | 1139 | 18 | 1141 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0424 | 99.4505 | 98.6376 | 86.1143 | 362 | 2 | 362 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.6903 | 14 | 1 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1032 | 98.0366 | 98.1699 | 85.9427 | 749 | 15 | 751 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3836 | 98.4252 | 98.3421 | 86.5303 | 1125 | 18 | 1127 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.0014 | 99.4269 | 98.5795 | 85.3088 | 347 | 2 | 347 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.8668 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0040 | 97.9339 | 98.0743 | 85.2983 | 711 | 15 | 713 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3020 | 98.3456 | 98.2585 | 85.8752 | 1070 | 18 | 1072 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6577 | 99.3243 | 98.0000 | 87.4896 | 147 | 1 | 147 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8830 | 97.7823 | 97.9839 | 88.0998 | 485 | 11 | 486 | 10 | 4 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3569 | 99.6774 | 99.0385 | 83.3511 | 618 | 2 | 618 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 98.0000 | 96.0784 | 100.0000 | 92.0195 | 49 | 2 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4607 | 98.2650 | 98.6572 | 83.2006 | 1246 | 22 | 1249 | 17 | 4 | 23.5294 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7364 | 98.6591 | 98.8138 | 83.7031 | 1913 | 26 | 1916 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4460 | 98.2484 | 98.6443 | 83.0632 | 1234 | 22 | 1237 | 17 | 4 | 23.5294 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7206 | 98.6423 | 98.7990 | 83.5904 | 1889 | 26 | 1892 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3266 | 99.6622 | 98.9933 | 82.4396 | 590 | 2 | 590 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 97.8261 | 95.7447 | 100.0000 | 92.0635 | 45 | 2 | 45 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.4276 | 98.2630 | 98.5927 | 82.4444 | 1188 | 21 | 1191 | 17 | 4 | 23.5294 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7016 | 98.6472 | 98.7561 | 82.9460 | 1823 | 25 | 1826 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0366 | 99.6124 | 98.4674 | 83.9975 | 257 | 1 | 257 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 95.4064 | 13 | 1 | 13 | 0 | 0 | ||