PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84801-84850 / 86044 show all
anovak-vgINDELD16_PLUSmap_l250_m1_e0*
57.1429
50.0000
66.6667
97.2477
22211
100.0000
anovak-vgINDELD16_PLUSmap_l250_m1_e0het
66.6667
66.6667
66.6667
96.0526
21211
100.0000
anovak-vgINDELD16_PLUSmap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
anovak-vgINDELD16_PLUSmap_l250_m2_e0*
66.6667
60.0000
75.0000
96.5217
32311
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e0het
66.6667
66.6667
66.6667
96.2500
21211
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e0hetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.1429
10100
anovak-vgINDELD16_PLUSmap_l250_m2_e1*
66.6667
60.0000
75.0000
96.6387
32311
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e1het
66.6667
66.6667
66.6667
96.3415
21211
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e1hetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
97.2973
10100
anovak-vgINDELD16_PLUSmap_siren*
55.8559
43.3566
78.4810
82.5221
6281621714
82.3529
anovak-vgINDELD16_PLUSmap_sirenhet
65.2174
57.6923
75.0000
77.5439
4533481613
81.2500
anovak-vgINDELD16_PLUSmap_sirenhetalt
0.0000
6.4516
0.0000
0.0000
229000
anovak-vgINDELD16_PLUSmap_sirenhomalt
59.9144
44.1176
93.3333
91.0180
15191411
100.0000
anovak-vgINDELD16_PLUSsegdup*
76.0605
68.9655
84.7826
91.5129
40183974
57.1429
anovak-vgINDELD16_PLUSsegduphet
82.8571
78.3784
87.8788
91.3613
2982943
75.0000
anovak-vgINDELD16_PLUSsegduphetalt
0.0000
0.0000
0.0000
09000
anovak-vgINDELD16_PLUSsegduphomalt
83.6502
91.6667
76.9231
91.8750
1111031
33.3333
anovak-vgINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
anovak-vgINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
anovak-vgINDELD16_PLUSsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
anovak-vgINDELD16_PLUStech_badpromoters*
33.3333
25.0000
50.0000
50.0000
13111
100.0000
anovak-vgINDELD16_PLUStech_badpromotershet
40.0000
25.0000
100.0000
0.0000
13100
anovak-vgINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUStech_badpromotershomalt
0.0000
0.0000
66.6667
00011
100.0000
anovak-vgINDELD1_5**
90.2130
89.2296
91.2183
56.6455
13094015805132532127599010
70.6168
anovak-vgINDELD1_5*het
92.1131
94.4127
89.9228
55.4448
8268148938677197246623
68.1098
anovak-vgINDELD1_5*hetalt
0.0000
29.0971
0.0000
0.0000
29817264000
anovak-vgINDELD1_5*homalt
93.1579
92.5438
93.7802
58.8390
4527836484576130352387
78.6491
anovak-vgINDELD1_5HG002complexvar*
91.1523
90.0107
92.3232
54.8532
2944732682978924771674
67.5818
anovak-vgINDELD1_5HG002complexvarhet
92.0015
90.8693
93.1622
52.9821
188691896195651436834
58.0780
anovak-vgINDELD1_5HG002complexvarhetalt
0.0000
35.5769
0.0000
0.0000
481871000
anovak-vgINDELD1_5HG002complexvarhomalt
92.9611
95.2727
90.7590
57.9711
10097501102241041840
80.6916
anovak-vgINDELD1_5HG002compoundhet*
38.6407
34.4667
43.9649
65.5035
42178018485961934434
71.5970
anovak-vgINDELD1_5HG002compoundhethet
54.0229
57.5810
50.8790
62.2806
995733442842752764
64.6550
anovak-vgINDELD1_5HG002compoundhethetalt
0.0000
29.0525
0.0000
0.0000
29687248000
anovak-vgINDELD1_5HG002compoundhethomalt
30.3224
87.2852
18.3482
73.7981
2543743119181670
87.0699
anovak-vgINDELD1_5decoy*
77.4194
75.0000
80.0000
99.9469
31410
0.0000
anovak-vgINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9735
20200
anovak-vgINDELD1_5decoyhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD1_5decoyhomalt
80.0000
100.0000
66.6667
99.8399
10210
0.0000
anovak-vgINDELD1_5func_cds*
92.1630
92.4528
91.8750
37.7432
14712147139
69.2308
anovak-vgINDELD1_5func_cdshet
90.3955
94.1176
86.9565
42.5000
80580128
66.6667
anovak-vgINDELD1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5func_cdshomalt
94.3662
90.5405
98.5294
29.8969
6776711
100.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
44.1057
39.2068
50.4037
54.9961
15622422174817201273
74.0116
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.0866
65.0355
47.7778
51.5804
917493137615041123
74.6676