PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84451-84500 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | * | * | 98.3366 | 98.3717 | 98.3016 | 24.5602 | 953908 | 15790 | 951566 | 16441 | 6526 | 39.6934 | |
| anovak-vg | SNP | tv | * | het | 97.9352 | 98.2070 | 97.6649 | 27.4537 | 581095 | 10609 | 580225 | 13873 | 4566 | 32.9129 | |
| anovak-vg | SNP | tv | * | hetalt | 0.0000 | 14.4661 | 0.0000 | 0.0000 | 126 | 745 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | * | homalt | 99.0679 | 98.8237 | 99.3132 | 19.4559 | 372687 | 4436 | 371341 | 2568 | 1960 | 76.3240 | |
| anovak-vg | SNP | tv | HG002complexvar | * | 97.7258 | 97.1262 | 98.3329 | 22.6263 | 239081 | 7074 | 235589 | 3994 | 2964 | 74.2113 | |
| anovak-vg | SNP | tv | HG002complexvar | het | 97.4369 | 96.9012 | 97.9786 | 22.5474 | 146063 | 4671 | 144347 | 2978 | 2196 | 73.7408 | |
| anovak-vg | SNP | tv | HG002complexvar | hetalt | 0.0000 | 15.8065 | 0.0000 | 0.0000 | 49 | 261 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002complexvar | homalt | 98.3199 | 97.7479 | 98.8987 | 22.7520 | 92969 | 2142 | 91242 | 1016 | 768 | 75.5906 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| anovak-vg | SNP | tv | HG002compoundhet | het | 77.7767 | 79.7346 | 75.9127 | 53.8008 | 3726 | 947 | 4346 | 1379 | 1030 | 74.6918 | |
| anovak-vg | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 14.6172 | 0.0000 | 0.0000 | 126 | 736 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002compoundhet | homalt | 77.3553 | 84.3861 | 71.4060 | 43.1411 | 2859 | 529 | 2717 | 1088 | 616 | 56.6176 | |
| anovak-vg | SNP | tv | decoy | * | 0.0000 | 0.0000 | 99.9988 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | decoy | het | 0.0000 | 0.0000 | 99.9986 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | func_cds | * | 98.2741 | 97.7580 | 98.7957 | 36.4158 | 4273 | 98 | 4266 | 52 | 32 | 61.5385 | |
| anovak-vg | SNP | tv | func_cds | het | 97.9570 | 97.3654 | 98.5557 | 42.0612 | 2587 | 70 | 2593 | 38 | 21 | 55.2632 | |
| anovak-vg | SNP | tv | func_cds | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 3 | 7 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | func_cds | homalt | 98.9685 | 98.7676 | 99.1701 | 25.0222 | 1683 | 21 | 1673 | 14 | 11 | 78.5714 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.3470 | 92.5462 | 90.1786 | 71.2135 | 1403 | 113 | 1414 | 154 | 61 | 39.6104 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.1362 | 91.0282 | 87.3213 | 73.7422 | 903 | 89 | 916 | 133 | 46 | 34.5865 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6861 | 95.4198 | 95.9538 | 64.2562 | 500 | 24 | 498 | 21 | 15 | 71.4286 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.4923 | 97.2577 | 95.7388 | 64.3143 | 26919 | 759 | 27590 | 1228 | 588 | 47.8827 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.8647 | 96.7839 | 94.9628 | 65.9014 | 17003 | 565 | 17476 | 927 | 381 | 41.1003 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 23.0769 | 0.0000 | 0.0000 | 3 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6409 | 98.1777 | 97.1099 | 61.1163 | 9913 | 184 | 10114 | 301 | 207 | 68.7708 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.3755 | 92.9518 | 86.0642 | 79.3543 | 13544 | 1027 | 13809 | 2236 | 557 | 24.9106 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.2248 | 91.8756 | 81.2289 | 81.5160 | 8391 | 742 | 8646 | 1998 | 399 | 19.9700 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2600 | 94.9290 | 95.5934 | 73.1707 | 5148 | 275 | 5163 | 238 | 158 | 66.3866 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0448 | 95.6587 | 96.4340 | 58.7351 | 1278 | 58 | 1271 | 47 | 25 | 53.1915 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4177 | 95.2047 | 95.6316 | 62.5883 | 814 | 41 | 810 | 37 | 17 | 45.9459 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1662 | 96.4657 | 97.8769 | 49.3548 | 464 | 17 | 461 | 10 | 8 | 80.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5318 | 97.5161 | 97.5474 | 64.9131 | 2120 | 54 | 2108 | 53 | 24 | 45.2830 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2183 | 97.1882 | 97.2484 | 66.9538 | 1348 | 39 | 1343 | 38 | 14 | 36.8421 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.1478 | 98.2188 | 98.0769 | 60.6061 | 772 | 14 | 765 | 15 | 10 | 66.6667 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.9774 | 97.8472 | 98.1079 | 69.1926 | 1409 | 31 | 1400 | 27 | 11 | 40.7407 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.7533 | 97.8118 | 97.6948 | 70.8013 | 894 | 20 | 890 | 21 | 8 | 38.0952 | |