PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
501-550 / 86044 show all
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9014
100.0000
54.7268
60826608200
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9097
99.8737
99.9458
56.0006
11070141106665
83.3333
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9243
99.8836
99.9650
55.5651
17157201715365
83.3333
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
93.3333
93.3333
93.3333
95.4955
1411410
0.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_51to200het
85.1064
74.0741
100.0000
97.7949
2072000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_51to200*
88.3117
80.9524
97.1429
97.1797
3483410
0.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7825
99.5948
99.9709
63.5497
344114344111
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50het
99.6796
99.7755
99.5839
69.4549
62221462222619
73.0769
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7162
99.7111
99.7214
67.6049
96642896642720
74.0741
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7936
99.6701
99.9173
72.0908
169195616921144
28.5714
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5123
99.4950
99.5296
71.9110
285671452856113547
34.8148
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7185
99.5147
99.9231
80.8305
389619389831
33.3333
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3125
30300
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.5932
99.6513
99.5352
81.3843
68592468533218
56.2500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6387
99.6019
99.6756
81.2035
1075843107543519
54.2857
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4703
99.1784
99.7639
83.7209
845784521
50.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2751
99.6037
98.9488
87.5654
1508615061613
81.2500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3458
99.4510
99.2408
86.4188
23551323531814
77.7778
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4201
99.1588
99.6829
84.8446
943894331
33.3333
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.0365
99.1497
98.9235
87.9760
17491517461914
73.6842
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.1713
99.1535
99.1891
87.0415
26942326912215
68.1818
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
99.0990
99.0909
99.1071
90.7970
109111110
0.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.4250
96.3768
98.4962
90.6073
2661026242
50.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.9078
97.1503
98.6772
90.6644
3751137352
40.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7463
99.4939
100.0000
59.2175
13767137600
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9198
99.9599
99.8798
58.8255
24931249331
33.3333
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8581
99.7937
99.9225
58.9725
38708387031
33.3333
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7998
99.6004
100.0000
54.6227
22439224300
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8728
99.8982
99.8474
55.2916
39274392761
16.6667
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8463
99.7898
99.9029
55.0600
617113617161
16.6667
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8755
99.7514
100.0000
52.7941
16054160500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000