PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85351-85400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | tv | HG002compoundhet | * | 76.6128 | 76.8912 | 76.3364 | 58.1709 | 6861 | 2062 | 7126 | 2209 | 1084 | 49.0720 | |
| gduggal-snapvard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | func_cds | * | 98.8510 | 98.5129 | 99.1913 | 36.1464 | 4306 | 65 | 4293 | 35 | 10 | 28.5714 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.8084 | 94.5910 | 72.0693 | 83.9601 | 1434 | 82 | 1414 | 548 | 14 | 2.5547 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.7665 | 97.0048 | 92.6291 | 69.2144 | 26849 | 829 | 26579 | 2115 | 167 | 7.8960 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.2598 | 90.9752 | 82.0090 | 83.7372 | 13256 | 1315 | 13087 | 2871 | 130 | 4.5280 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.3897 | 97.0060 | 86.3881 | 76.4855 | 1296 | 40 | 1282 | 202 | 4 | 1.9802 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.4497 | 97.5621 | 86.0581 | 72.6726 | 2121 | 53 | 2074 | 336 | 8 | 2.3810 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.1761 | 97.7083 | 87.2368 | 73.1862 | 1407 | 33 | 1367 | 200 | 4 | 2.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.3265 | 76.3636 | 27.3973 | 91.1318 | 126 | 39 | 120 | 318 | 10 | 3.1447 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 65.5717 | 86.0759 | 52.9568 | 90.4618 | 1224 | 198 | 1200 | 1066 | 55 | 5.1595 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.9723 | 87.2727 | 58.3961 | 90.3865 | 1104 | 161 | 1085 | 773 | 47 | 6.0802 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.5998 | 93.5118 | 72.3797 | 87.9363 | 3877 | 269 | 3805 | 1452 | 65 | 4.4766 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.2598 | 90.9752 | 82.0090 | 83.7372 | 13256 | 1315 | 13087 | 2871 | 130 | 4.5280 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.2938 | 94.7900 | 86.2049 | 78.5292 | 4603 | 253 | 4568 | 731 | 64 | 8.7551 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.3333 | 53.8462 | 28.5714 | 97.4833 | 14 | 12 | 14 | 35 | 1 | 2.8571 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.5877 | 98.1945 | 98.9841 | 59.2905 | 10714 | 197 | 10620 | 109 | 34 | 31.1927 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8195 | 97.1685 | 90.6935 | 51.4915 | 7241 | 211 | 7153 | 734 | 47 | 6.4033 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 51.3219 | 83.3333 | 37.0787 | 89.6149 | 35 | 7 | 33 | 56 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.9560 | 96.0290 | 95.8832 | 44.2273 | 3313 | 137 | 3284 | 141 | 11 | 7.8014 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 100.0000 | 20.0000 | 96.1240 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | * | 91.8069 | 96.6258 | 87.4458 | 78.2460 | 10710 | 374 | 10685 | 1534 | 85 | 5.5411 | |
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | * | 94.4568 | 97.0001 | 92.0434 | 74.6951 | 23766 | 735 | 23680 | 2047 | 149 | 7.2789 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | * | 94.5205 | 97.0079 | 92.1574 | 76.1726 | 24284 | 749 | 24195 | 2059 | 151 | 7.3337 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | * | 94.5392 | 97.0059 | 92.1948 | 76.2078 | 24526 | 757 | 24427 | 2068 | 154 | 7.4468 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | * | 89.3998 | 96.0489 | 83.6117 | 82.4411 | 6369 | 262 | 6357 | 1246 | 62 | 4.9759 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | * | 93.0563 | 96.9343 | 89.4767 | 78.3907 | 15525 | 491 | 15475 | 1820 | 120 | 6.5934 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | * | 93.1565 | 96.9192 | 89.6752 | 79.7699 | 15981 | 508 | 15929 | 1834 | 123 | 6.7067 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | * | 93.1692 | 96.8962 | 89.7183 | 79.8287 | 16140 | 517 | 16082 | 1843 | 125 | 6.7824 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | * | 87.3397 | 95.8793 | 80.1968 | 85.6633 | 4002 | 172 | 3993 | 986 | 44 | 4.4625 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | * | 91.4337 | 96.5909 | 86.7993 | 81.5080 | 10540 | 372 | 10514 | 1599 | 100 | 6.2539 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | * | 91.6223 | 96.6094 | 87.1248 | 82.6892 | 10970 | 385 | 10942 | 1617 | 102 | 6.3080 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | * | 91.6730 | 96.6093 | 87.2166 | 82.7232 | 11112 | 390 | 11080 | 1624 | 104 | 6.4039 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 7.6923 | 0.0000 | 87.5000 | 1 | 12 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | * | 60.9208 | 60.3448 | 61.5079 | 79.7590 | 70 | 46 | 155 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | * | 62.0192 | 60.0000 | 64.1791 | 85.8351 | 9 | 6 | 43 | 24 | 16 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | * | 59.6747 | 64.1509 | 55.7823 | 82.2678 | 34 | 19 | 82 | 65 | 50 | 76.9231 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | * | 60.0321 | 64.1509 | 56.4103 | 82.6087 | 34 | 19 | 88 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | * | 60.1890 | 64.1509 | 56.6879 | 82.9162 | 34 | 19 | 89 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | * | 61.5942 | 62.5000 | 60.7143 | 91.7889 | 5 | 3 | 17 | 11 | 8 | 72.7273 | |