PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
301-350 / 86044 show all
ciseli-customSNPtv*het
95.4085
98.2395
92.7361
26.7935
5812871041758058345476409
0.8994
anovak-vgSNPtv*het
97.9352
98.2070
97.6649
27.4537
58109510609580225138734566
32.9129
asubramanian-gatkSNPtv*het
98.8211
97.8557
99.8057
26.7081
57900812688578944112742
3.7267
mlin-fermikitSNPtv*het
98.7020
97.6537
99.7731
18.7114
57782113883577760131414
1.0655
gduggal-bwaplatSNPtv*het
98.5255
97.5640
99.5062
36.2003
577282144145775772866351
12.2470
ckim-isaacSNPtv*het
98.4858
97.0571
99.9572
19.2906
5742911741357457624632
13.0081
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
bgallagher-sentieonSNPtiHG002complexvar*
99.9558
99.9337
99.9780
17.4939
50809933750803511253
47.3214
dgrover-gatkSNPtiHG002complexvar*
99.9530
99.9268
99.9791
17.5262
50806437250800010656
52.8302
jli-customSNPtiHG002complexvar*
99.9464
99.9180
99.9748
17.5160
50801941750797912858
45.3125
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
hfeng-pmm3SNPtiHG002complexvar*
99.9019
99.8171
99.9868
17.4486
5075069305074466725
37.3134
gduggal-bwafbSNPtiHG002complexvar*
99.8223
99.7766
99.8681
18.4222
5073011136507384670291
43.4328
hfeng-pmm2SNPtiHG002complexvar*
99.8914
99.8002
99.9829
17.3851
50742010165073618738
43.6782
hfeng-pmm1SNPtiHG002complexvar*
99.8935
99.8000
99.9872
17.3497
50741910175073606531
47.6923
raldana-dualsentieonSNPtiHG002complexvar*
99.8917
99.7990
99.9846
17.3582
50741410225073547829
37.1795
ltrigg-rtg2SNPtiHG002complexvar*
99.8779
99.7988
99.9570
17.4272
507413102350731621898
44.9541
ghariani-varprowlSNPtiHG002complexvar*
99.5322
99.7412
99.3241
19.7678
50711313165072833452789
22.8563
egarrison-hhgaSNPtiHG002complexvar*
99.8425
99.7343
99.9509
17.5278
5070851351507107249148
59.4378
gduggal-snapfbSNPtiHG002complexvar*
99.2700
99.6259
98.9167
19.8956
50653519025070435553819
14.7488
ltrigg-rtg1SNPtiHG002complexvar*
99.8532
99.7400
99.9667
17.5108
507114132250703416980
47.3373
ndellapenna-hhgaSNPtiHG002complexvar*
99.8069
99.6755
99.9387
17.4775
5067861650506808311223
71.7042
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
jpowers-varprowlSNPtiHG002complexvar*
99.5182
99.3169
99.7203
18.7923
50496134735051191417799
56.3867
ckim-gatkSNPtiHG002complexvar*
99.5943
99.2243
99.9671
17.9110
504492394450443216674
44.5783
jmaeng-gatkSNPtiHG002complexvar*
99.5813
99.1995
99.9661
17.9457
504366407050430617177
45.0292
astatham-gatkSNPtiHG002complexvar*
99.2181
98.4614
99.9866
17.7102
50061378235005486741
61.1940
gduggal-snapplatSNPtiHG002complexvar*
98.2167
97.8257
98.6108
20.9389
4973821105549779970131203
17.1539
ckim-vqsrSNPtiHG002complexvar*
98.8535
97.7474
99.9849
18.1351
496983114534969257538
50.6667
mlin-fermikitSNPtiHG002complexvar*
98.2652
97.2431
99.3090
16.9696
4944201401749440534403276
95.2326
gduggal-bwaplatSNPtiHG002complexvar*
97.9838
97.0464
98.9394
19.5056
493419150174937545293700
13.2250
qzeng-customSNPtiHG002complexvar*
99.1315
98.4529
99.8194
18.2769
5005717866493623893400
44.7928
asubramanian-gatkSNPtiHG002complexvar*
98.3380
96.7457
99.9835
17.8536
491890165464918308136
44.4444
ciseli-customSNPtiHG002complexvar*
96.3915
97.0905
95.7026
18.7897
49364414793488642219425540
25.2484
gduggal-bwavardSNPtiHG002complexvar*
98.2991
97.1039
99.5241
18.2603
4937121472548557623221599
68.8630
anovak-vgSNPtiHG002complexvar*
97.6154
96.7854
98.4597
17.8294
4920931634448465575826075
80.1240
eyeh-varpipeSNPtiHG002complexvar*
99.8888
99.9038
99.8738
17.3355
507948489484239612191
31.2092
gduggal-snapvardSNPtiHG002complexvar*
97.8937
96.7473
99.0676
19.7850
4918981653848303945461783
39.2213
ckim-isaacSNPtiHG002complexvar*
96.1858
92.7592
99.8753
15.7158
47162236815471809589446
75.7216
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
dgrover-gatkSNP*HG002complexvarhet
99.9434
99.9156
99.9712
18.5452
46510439346497413453
39.5522
jli-customSNP*HG002complexvarhet
99.9263
99.8859
99.9667
18.4399
46496653146487215554
34.8387
jlack-gatkSNP*HG002complexvarhet
99.8914
99.8855
99.8973
19.1615
464964533464834478152
31.7992
rpoplin-dv42SNP*HG002complexvarhet
99.8978
99.8245
99.9712
18.3215
464680817464534134101
75.3731
ltrigg-rtg2SNP*HG002complexvarhet
99.8358
99.7414
99.9305
18.3888
464296120446451532394
29.1022
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892
ltrigg-rtg1SNP*HG002complexvarhet
99.8148
99.6788
99.9511
18.4181
464005149546423522759
25.9912
gduggal-snapfbSNP*HG002complexvarhet
98.8655
99.5639
98.1768
21.9725
46347020304642358621899
10.4280