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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
701-750 / 86044 show all
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
67.5308
74.8546
61.5124
50.8317
43761470872854614703
86.1198
gduggal-snapvardSNP*HG002compoundhet*
79.9672
80.6669
79.2796
52.8107
2082949922086454532407
44.1408
ghariani-varprowlSNP*HG002complexvarhet
99.2312
99.6262
98.8393
22.3346
46375217404640235449138
2.5326
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.2305
44.8305
59.7622
50.2699
79229749809354494223
77.5005
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
51.2305
44.8305
59.7622
50.2699
79229749809354494223
77.5005
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
77.1866
71.6422
83.6612
80.1878
2381194252789654481746
32.0485
jpowers-varprowlINDELD1_5HG002compoundhethet
35.3608
87.3843
22.1650
69.9316
1510218155054435389
99.0079
ghariani-varprowlINDELD6_15HG002compoundhethet
22.6701
91.4720
12.9384
39.2155
7837380854375400
99.3195
gduggal-bwafbINDEL***
96.9474
95.5004
98.4390
56.3888
3290391550334249254314691
86.3745
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
53.5870
96.7318
37.0581
53.6813
3167107318754135386
99.5012
gduggal-snapfbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
52.4956
98.0106
35.8482
76.1642
2956603022540861
1.1280
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.4454
86.5913
34.6019
50.3848
2835439285553965373
99.5738
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
76.1186
81.3959
71.4838
54.5214
1282829321348953812743
50.9757
gduggal-snapfbSNPtiHG002compoundhet*
85.8670
98.1291
76.3290
43.9481
17151327173455379340
6.3209
jpowers-varprowlINDELD6_15HG002compoundhethet
21.3553
84.1121
12.2302
37.5281
72013674853685337
99.4225
ghariani-varprowlINDEL*HG002complexvarhet
93.2466
97.4941
89.3538
59.7893
4505311584502053644472
83.3706
ciseli-customINDELD1_5HG002compoundhethomalt
8.4350
85.5670
4.4361
66.5215
2494224953645004
93.2886
ciseli-customSNP*map_l100_m2_e1het
81.9772
77.3999
87.1298
75.6982
3629910599362195350161
3.0094
ciseli-customSNP*map_l100_m2_e0het
81.8850
77.2883
87.0629
75.7023
3586110538357825317161
3.0280
gduggal-snapvardSNP*HG002compoundhethet
77.1322
83.8682
71.3978
57.2411
1189022871327053162307
43.3973
anovak-vgSNPtimap_l100_m0_e0*
81.1499
85.0168
77.6195
74.1271
1850932621836452951408
26.5911
gduggal-bwaplatSNPtiHG002complexvar*
97.9838
97.0464
98.9394
19.5056
493419150174937545293700
13.2250
mlin-fermikitSNP*HG002complexvar*
98.2239
97.1863
99.2840
18.6883
7331592122673307452875014
94.8364
anovak-vgINDELI6_15*homalt
61.4755
80.7661
49.6232
33.6435
50391200520252814685
88.7143
ndellapenna-hhgaINDEL*HG002compoundhethet
62.3220
85.8085
48.9296
57.3342
3513581505152725065
96.0736
gduggal-bwavardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
42.4373
41.1000
43.8645
68.7909
41405933411852704818
91.4231
ciseli-customINDELD6_15*homalt
66.6499
91.7325
52.3387
51.6724
5803523578552684853
92.1222
anovak-vgSNP*map_l125_m0_e0*
79.0837
83.3789
75.2094
80.8664
1616332221598252681460
27.7145
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
64.2360
57.8454
72.2140
63.0306
1056276971364752513074
58.5412
anovak-vgSNPtimap_l100_m0_e0het
78.0640
88.2071
70.0131
76.8266
1233416491226052511367
26.0331
gduggal-bwavardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
54.1148
85.3960
39.6066
69.0608
3450590344352504800
91.4286
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.9906
94.9155
89.2405
50.9643
169139064345352393113
59.4197
ciseli-customSNP*map_l100_m1_e0het
81.6533
76.9704
86.9429
74.2795
3491310446348385232159
3.0390
anovak-vgSNP*map_l125_m0_e0het
76.4858
87.7448
67.7876
82.7028
1111215521100652301427
27.2849
anovak-vgSNP*HG002compoundhet*
78.0620
76.6207
79.5586
43.6697
1978560372029752153696
70.8725
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.2265
37.0781
43.9591
50.2516
41096973408652095192
99.6736
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
54.7290
97.4954
38.0419
50.8575
319282319452025186
99.6924
ghariani-varprowlINDELI1_5HG002compoundhethet
21.0205
76.7059
12.1791
72.5111
65219872151995126
98.5959
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.0417
99.3129
89.3019
78.9695
45388314433405192210
4.0447
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.0417
99.3129
89.3019
78.9695
45388314433405192210
4.0447
gduggal-snapfbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
89.0223
86.9300
91.2178
68.3628
4196263095383451831886
36.3882
eyeh-varpipeINDELI1_5**
94.9923
93.5665
96.4622
53.4954
140971969314110351754944
95.5362
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
43.5285
42.1324
45.0202
75.7921
42445829423151675021
97.1744
gduggal-bwaplatSNPtiHG002complexvarhet
97.7064
97.0801
98.3410
19.6959
30557591913061615165589
11.4037
gduggal-bwavardSNPtv**
99.2324
99.0032
99.4627
26.1679
960032966695530951611540
29.8392
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
75.4653
90.5356
64.6962
41.2162
1234129945651604823
93.4690
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.1864
43.7705
46.6970
66.0012
44095664451751563623
70.2676
mlin-fermikitSNP*HG002complexvarhomalt
98.3225
98.4247
98.2205
20.7847
284029454628404351464990
96.9685