PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85151-85200 / 86044 show all
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.2781
97.3753
99.1979
63.8123
7422074261
16.6667
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7849
1001000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4468
99.0921
99.8040
75.9768
152814152831
33.3333
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5749
99.1533
100.0000
79.4702
10549105400
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.9895
89.5064
98.9454
55.5533
215825321582321
91.3043
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
01000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7194
96.0089
99.4918
41.3653
197748221977510187
86.1386
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1845
96.8509
99.5553
39.7095
17684575176857967
84.8101
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8177
96.1933
99.4980
48.4397
214038472140410889
82.4074
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5102
97.4083
99.6374
38.9351
23904636239068770
80.4598
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
80.5324
69.4405
95.8416
48.3640
4842134842119
90.4762
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7867
99.6017
99.9723
54.3769
252581012526073
42.8571
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9990
10100
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4714
99.0316
99.9151
48.2190
1176011511765107
70.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
97.7720
96.1851
99.4123
57.0191
118547118476
85.7143
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6310
99.3377
99.9260
40.6323
405027405330
0.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
93.8776
92.0000
95.8333
60.4396
6966932
66.6667
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
01000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
100.0000
0.0000
0.0000
10000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_quadTR_11to50*
0.0000
0.0000
0.0000
01000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_triTR_11to50*
0.0000
100.0000
0.0000
0.0000
10000
hfeng-pmm1INDELC1_5lowcmp_SimpleRepeat_triTR_51to200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m0_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m1_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e1*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l125_m0_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l125_m1_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l125_m2_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l125_m2_e1*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l150_m0_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l150_m1_e0*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l150_m2_e0*
0.0000
0.0000
0.0000
00000