PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
751-800 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | homalt | 99.8291 | 99.7275 | 99.9308 | 59.5568 | 27448 | 75 | 27448 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | homalt | 99.8258 | 99.7223 | 99.9295 | 56.9722 | 26928 | 75 | 26928 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | homalt | 99.7198 | 99.5353 | 99.9050 | 58.6521 | 11566 | 54 | 11566 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.8140 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9852 | 99.9852 | 99.9852 | 34.3808 | 6744 | 1 | 6744 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9507 | 99.9671 | 99.9343 | 54.3615 | 6086 | 2 | 6086 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.0563 | 14 | 1 | 14 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8406 | 99.7395 | 99.9420 | 62.2220 | 3446 | 9 | 3446 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8260 | 99.7054 | 99.9469 | 65.8244 | 16925 | 50 | 16925 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7826 | 99.6424 | 99.9232 | 75.5082 | 3901 | 14 | 3901 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5294 | 99.2958 | 99.7642 | 84.2672 | 846 | 6 | 846 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3133 | 98.8433 | 99.7877 | 85.1420 | 940 | 11 | 940 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.2222 | 95.4545 | 99.0566 | 90.3811 | 105 | 5 | 105 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 57.2621 | 1383 | 0 | 1383 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.6849 | 2251 | 1 | 2251 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.3110 | 1606 | 3 | 1606 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8260 | 99.7054 | 99.9469 | 65.8244 | 16925 | 50 | 16925 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9455 | 99.9307 | 99.9604 | 55.9950 | 20185 | 14 | 20185 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5423 | 99.8852 | 59.7783 | 1740 | 8 | 1740 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 20.6414 | 6978 | 1 | 6978 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.8609 | 99.9165 | 34.8192 | 10767 | 15 | 10768 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | * | HG002complexvar | homalt | 99.9794 | 99.9695 | 99.9893 | 19.8637 | 288486 | 88 | 288471 | 31 | 29 | 93.5484 | |
| raldana-dualsentieon | SNP | * | * | homalt | 99.9888 | 99.9827 | 99.9949 | 17.0955 | 1179957 | 204 | 1179943 | 60 | 53 | 88.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.8330 | 45 | 2 | 45 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_siren | homalt | 96.1749 | 97.7778 | 94.6237 | 82.9044 | 88 | 2 | 88 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.9231 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.7213 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | homalt | 80.0000 | 75.0000 | 85.7143 | 94.8148 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 95.3125 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 94.5946 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.5254 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.1765 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.3563 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 85.8974 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |