PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85001-85050 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | C1_5 | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | * | 96.2305 | 97.3642 | 95.1229 | 91.2925 | 4876 | 132 | 4876 | 250 | 52 | 20.8000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | * | 96.1939 | 97.3404 | 95.0741 | 91.3522 | 4941 | 135 | 4941 | 256 | 54 | 21.0938 | |
| ghariani-varprowl | SNP | ti | map_siren | * | 99.0024 | 99.3374 | 98.6698 | 59.6146 | 99690 | 665 | 99693 | 1344 | 247 | 18.3780 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| ghariani-varprowl | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | tech_badpromoters | * | 96.5517 | 98.8235 | 94.3820 | 48.8506 | 84 | 1 | 84 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | SNP | tv | * | * | 98.9190 | 99.7874 | 98.0655 | 30.2667 | 967620 | 2062 | 967900 | 19093 | 1348 | 7.0602 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | * | 98.9457 | 99.5507 | 98.3479 | 26.3760 | 245046 | 1106 | 245266 | 4120 | 790 | 19.1748 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | * | 76.9891 | 85.1395 | 70.2629 | 63.5595 | 7597 | 1326 | 7724 | 3269 | 1134 | 34.6895 | |
| ghariani-varprowl | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.0162 | 97.8232 | 81.6639 | 77.4026 | 1483 | 33 | 1492 | 335 | 22 | 6.5672 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6349 | 98.9595 | 92.5264 | 70.1656 | 27390 | 288 | 27497 | 2221 | 284 | 12.7870 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7049 | 99.1018 | 92.5331 | 67.6378 | 1324 | 12 | 1326 | 107 | 8 | 7.4766 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6108 | 99.3560 | 92.1377 | 74.6935 | 2160 | 14 | 2168 | 185 | 14 | 7.5676 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.5502 | 99.5139 | 91.8902 | 78.2560 | 1433 | 7 | 1439 | 127 | 7 | 5.5118 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 55.9506 | 88.4848 | 40.9091 | 87.7738 | 146 | 19 | 153 | 221 | 13 | 5.8824 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.1668 | 93.6709 | 57.3812 | 87.0357 | 1332 | 90 | 1376 | 1022 | 85 | 8.3170 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.6476 | 94.3083 | 60.4126 | 87.0492 | 1193 | 72 | 1230 | 806 | 74 | 9.1811 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7525 | 97.3468 | 76.6261 | 86.4563 | 4036 | 110 | 4088 | 1247 | 102 | 8.1796 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.2109 | 97.6112 | 87.3769 | 74.0644 | 4740 | 116 | 4790 | 692 | 106 | 15.3179 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 84.6154 | 75.8621 | 96.7634 | 22 | 4 | 22 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2300 | 99.5784 | 96.9176 | 63.0014 | 10865 | 46 | 10879 | 346 | 49 | 14.1618 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3323 | 99.0070 | 93.7984 | 50.0158 | 7378 | 74 | 7396 | 489 | 75 | 15.3374 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.3252 | 90.4762 | 72.2222 | 91.7808 | 38 | 4 | 39 | 15 | 2 | 13.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.1636 | 99.0725 | 95.3268 | 47.5871 | 3418 | 32 | 3427 | 168 | 33 | 19.6429 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 97.3684 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | * | 97.0755 | 98.5204 | 95.6724 | 76.1776 | 10920 | 164 | 10921 | 494 | 87 | 17.6113 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | * | 97.8612 | 98.9756 | 96.7717 | 72.1277 | 24250 | 251 | 24251 | 809 | 135 | 16.6873 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.8210 | 98.9893 | 96.6799 | 73.9056 | 24780 | 253 | 24781 | 851 | 137 | 16.0987 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | * | 97.8230 | 98.9914 | 96.6819 | 73.9531 | 25028 | 255 | 25029 | 859 | 138 | 16.0652 | |
| ghariani-varprowl | SNP | tv | map_l125_m0_e0 | * | 96.2771 | 98.0848 | 94.5349 | 81.3241 | 6504 | 127 | 6504 | 376 | 68 | 18.0851 | |
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | * | 97.4146 | 98.6888 | 96.1728 | 76.4417 | 15806 | 210 | 15806 | 629 | 115 | 18.2830 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.4321 | 98.7143 | 96.1827 | 78.0708 | 16277 | 212 | 16277 | 646 | 117 | 18.1115 | |