PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
86001-86044 / 86044 show all | |||||||||||||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3985 | 98.9521 | 99.8489 | 49.8485 | 1322 | 14 | 1322 | 2 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 51.8223 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.3763 | 100.0000 | 45.8664 | 478 | 3 | 478 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6549 | 99.6320 | 99.6779 | 64.1892 | 2166 | 8 | 2166 | 7 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5315 | 99.5674 | 99.4957 | 65.2740 | 1381 | 6 | 1381 | 7 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8726 | 99.7455 | 100.0000 | 62.0339 | 784 | 2 | 784 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6530 | 99.7222 | 99.5839 | 69.2078 | 1436 | 4 | 1436 | 6 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4536 | 99.5624 | 99.3450 | 70.1434 | 910 | 4 | 910 | 6 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 525 | 0 | 525 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.2414 | 93.9394 | 94.5455 | 90.9836 | 155 | 10 | 156 | 9 | 2 | 22.2222 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0515 | 92.7419 | 97.4790 | 91.0526 | 115 | 9 | 116 | 3 | 2 | 66.6667 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 70.0000 | 0 | 0 | 0 | 6 | 0 | 0.0000 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.6667 | 40 | 1 | 40 | 0 | 0 | ||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7580 | 97.6793 | 97.8367 | 88.4863 | 1389 | 33 | 1402 | 31 | 10 | 32.2581 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0755 | 97.3713 | 98.7899 | 89.5852 | 889 | 24 | 898 | 11 | 9 | 81.8182 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 17.3913 | 100.0000 | 9.5238 | 78.5714 | 2 | 0 | 2 | 19 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0067 | 98.2249 | 99.8012 | 86.1050 | 498 | 9 | 502 | 1 | 1 | 100.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1886 | 98.1028 | 98.2745 | 88.1406 | 1241 | 24 | 1253 | 22 | 8 | 36.3636 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4861 | 97.9849 | 98.9924 | 89.4091 | 778 | 16 | 786 | 8 | 7 | 87.5000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 23.5294 | 100.0000 | 13.3333 | 80.7692 | 2 | 0 | 2 | 13 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0342 | 98.2942 | 99.7854 | 85.3275 | 461 | 8 | 465 | 1 | 1 | 100.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.9023 | 98.7458 | 99.0593 | 82.5203 | 4094 | 52 | 4107 | 39 | 10 | 25.6410 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8815 | 98.4877 | 99.2784 | 83.9265 | 2605 | 40 | 2614 | 19 | 9 | 47.3684 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 24.0000 | 100.0000 | 13.6364 | 80.3571 | 3 | 0 | 3 | 19 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5646 | 99.1989 | 99.9329 | 79.3662 | 1486 | 12 | 1490 | 1 | 1 | 100.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2216 | 97.3921 | 99.0654 | 77.9808 | 14191 | 380 | 14204 | 134 | 16 | 11.9403 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9134 | 97.0765 | 98.7647 | 80.5287 | 8866 | 267 | 8875 | 111 | 13 | 11.7117 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1035 | 98.9086 | 99.2991 | 66.9100 | 4803 | 53 | 4817 | 34 | 12 | 35.2941 | |
asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1727 | 98.8666 | 99.4807 | 69.4042 | 3053 | 35 | 3065 | 16 | 11 | 68.7500 | |
asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 |