PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbSNPtimap_l250_m1_e0het
93.8477
95.0809
92.6461
86.7956
28221462822224118
52.6786
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
gduggal-snapplatSNPtimap_l250_m1_e0het
88.1746
85.1415
91.4317
94.5451
25274412529237123
51.8987
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
gduggal-snapvardSNPtimap_l250_m1_e0het
81.6091
95.8895
71.0309
92.1854
28461222832115561
5.2814
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
88.8712
96.2797
82.5214
76.5304
60042326081128813
1.0093
ghariani-varprowlSNPtimap_l125_m1_e0het
97.6469
98.8229
96.4984
77.7923
1805121518051655143
21.8321
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7830
99.5760
99.9909
55.2895
11037471103410
0.0000
hfeng-pmm1SNPtimap_l150_m0_e0het
98.8393
98.5874
99.0925
80.9472
5025725023468
17.3913
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_51to200het
77.3481
68.6275
88.6076
92.5047
70327090
0.0000
hfeng-pmm2SNPtimap_l150_m2_e1het
99.0257
99.2009
98.8512
79.6610
129111041290715013
8.6667
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
95.8904
61600
hfeng-pmm3SNPtimap_l250_m0_e0het
98.2343
98.2869
98.1818
93.2251
91816918171
5.8824
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.6154
70700
jlack-gatkSNPtimap_l250_m2_e0het
92.2213
98.3712
86.7950
94.0302
320153320148740
8.2136
jli-customSNPtidecoyhet
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.6439
99.6762
99.6117
68.6485
3078103078128
66.6667
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNPtimap_l125_m2_e1hetalt
0.0000
33.3333
0.0000
0.0000
816000
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
astatham-gatkSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
75.6303
2912900
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
65.1163
1501500
asubramanian-gatkSNPtiHG002compoundhethetalt
95.8808
94.4732
97.3310
25.3652
54732547150
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
60.0000
100.0000
42.8571
84.3049
15015200
0.0000
ltrigg-rtg2SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
37.5000
206120733
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
83.3333
1201200
mlin-fermikitSNP*decoyhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvmap_l125_m2_e0hetalt
96.5517
93.3333
100.0000
76.0684
2822800
mlin-fermikitSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.0000
10100
mlin-fermikitSNPtvmap_l125_m2_e1hetalt
46.1538
30.0000
100.0000
76.9231
921900
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtimap_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
80000
cchapple-customSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
ciseli-customSNP*map_l100_m2_e0hetalt
72.0000
64.2857
81.8182
76.5957
27152765
83.3333
ciseli-customSNPtisegduphetalt
80.0000
100.0000
66.6667
96.5909
20210
0.0000
qzeng-customSNP*HG002compoundhethetalt
98.5292
97.2158
99.8786
21.9697
8382482311
100.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
qzeng-customSNPtvmap_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
ckim-dragenSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
83.0409
2912900
ckim-dragenSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000