PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85901-85950 / 86044 show all
asubramanian-gatkSNPtimap_l100_m2_e1homalt
58.0606
40.9052
100.0000
78.3356
756510929756500
asubramanian-gatkSNPtimap_l125_m0_e0*
36.2073
22.1125
99.8585
94.7728
28229940282244
100.0000
asubramanian-gatkSNPtimap_l125_m0_e0het
39.3510
24.5068
99.8029
95.3774
20256238202544
100.0000
asubramanian-gatkSNPtimap_l125_m0_e0hetalt
22.2222
12.5000
100.0000
97.2222
17100
asubramanian-gatkSNPtimap_l125_m0_e0homalt
30.1116
17.7243
100.0000
92.1453
796369579600
asubramanian-gatkSNPtimap_l125_m1_e0*
47.1088
30.8267
99.8454
90.8763
9043202929041145
35.7143
asubramanian-gatkSNPtimap_l125_m1_e0het
50.2744
33.6034
99.7724
92.0217
6138121286136145
35.7143
asubramanian-gatkSNPtimap_l125_m1_e0hetalt
40.0000
25.0000
100.0000
90.3226
618600
asubramanian-gatkSNPtimap_l125_m1_e0homalt
41.5806
26.2472
100.0000
86.8829
28998146289900
asubramanian-gatkSNPtimap_l125_m2_e0*
48.4647
32.0015
99.8144
91.1697
9683205759681186
33.3333
asubramanian-gatkSNPtimap_l125_m2_e0het
51.5556
34.7637
99.7264
92.2284
6562123146560186
33.3333
asubramanian-gatkSNPtimap_l125_m2_e0hetalt
40.0000
25.0000
100.0000
92.5926
618600
asubramanian-gatkSNPtimap_l125_m2_e0homalt
43.0457
27.4256
100.0000
87.5971
31158243311500
asubramanian-gatkSNPtimap_l125_m2_e1*
48.6953
32.2026
99.8174
91.1355
9844207259842186
33.3333
asubramanian-gatkSNPtimap_l125_m2_e1het
51.8016
34.9872
99.7311
92.1950
6678124096676186
33.3333
asubramanian-gatkSNPtimap_l125_m2_e1hetalt
40.0000
25.0000
100.0000
92.5926
618600
asubramanian-gatkSNPtimap_l125_m2_e1homalt
43.2344
27.5790
100.0000
87.5507
31608298316000
asubramanian-gatkSNPtimap_l150_m0_e0*
32.0231
19.0688
99.8668
96.6434
14996362149922
100.0000
asubramanian-gatkSNPtimap_l150_m0_e0het
34.9037
21.1497
99.8148
97.0413
10784019107822
100.0000
asubramanian-gatkSNPtimap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
96.8750
12100
asubramanian-gatkSNPtimap_l150_m0_e0homalt
26.4068
15.2119
100.0000
94.8680
420234142000
asubramanian-gatkSNPtimap_l150_m1_e0*
39.2304
24.4115
99.8340
94.1489
481214900481084
50.0000
asubramanian-gatkSNPtimap_l150_m1_e0het
42.4790
26.9846
99.7608
94.8360
33389032333684
50.0000
asubramanian-gatkSNPtimap_l150_m1_e0hetalt
50.0000
33.3333
100.0000
90.7407
510500
asubramanian-gatkSNPtimap_l150_m1_e0homalt
33.4015
20.0491
100.0000
91.6220
14695858146900
asubramanian-gatkSNPtimap_l150_m2_e0*
40.8545
25.6874
99.7538
94.2642
5269152435267135
38.4615
asubramanian-gatkSNPtimap_l150_m2_e0het
44.0116
28.2431
99.6437
94.9202
363892433636135
38.4615
asubramanian-gatkSNPtimap_l150_m2_e0hetalt
50.0000
33.3333
100.0000
92.7536
510500
asubramanian-gatkSNPtimap_l150_m2_e0homalt
35.1872
21.3498
100.0000
91.9313
16265990162600
asubramanian-gatkSNPtimap_l150_m2_e1*
40.9816
25.7878
99.7572
94.2645
5344153795342135
38.4615
asubramanian-gatkSNPtimap_l150_m2_e1het
44.1440
28.3519
99.6487
94.9230
369093253688135
38.4615
asubramanian-gatkSNPtimap_l150_m2_e1hetalt
50.0000
33.3333
100.0000
92.7536
510500
asubramanian-gatkSNPtimap_l150_m2_e1homalt
35.3029
21.4351
100.0000
91.9163
16496044164900
asubramanian-gatkSNPtimap_l250_m0_e0*
32.2936
19.2701
99.6226
98.9715
264110626411
100.0000
asubramanian-gatkSNPtimap_l250_m0_e0het
33.4817
20.1285
99.4709
99.1011
18874618811
100.0000
asubramanian-gatkSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtimap_l250_m0_e0homalt
29.6875
17.4312
100.0000
98.3895
763607600
asubramanian-gatkSNPtimap_l250_m1_e0*
32.0381
19.0871
99.6579
98.2478
874370587431
33.3333
asubramanian-gatkSNPtimap_l250_m1_e0het
33.8831
20.4178
99.5074
98.4836
606236260631
33.3333
asubramanian-gatkSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
04000
asubramanian-gatkSNPtimap_l250_m1_e0homalt
28.5867
16.6770
100.0000
97.2814
268133926800
asubramanian-gatkSNPtimap_l250_m2_e0*
33.5713
20.1877
99.6059
98.2299
10113997101141
25.0000
asubramanian-gatkSNPtimap_l250_m2_e0het
35.4961
21.6042
99.4342
98.4524
703255170341
25.0000
asubramanian-gatkSNPtimap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
97.5000
14100
asubramanian-gatkSNPtimap_l250_m2_e0homalt
29.8638
17.5529
100.0000
97.3580
307144230700
asubramanian-gatkSNPtimap_l250_m2_e1*
33.6335
20.2325
99.6120
98.2384
10274049102741
25.0000
asubramanian-gatkSNPtimap_l250_m2_e1het
35.5489
21.6429
99.4429
98.4616
714258571441
25.0000
asubramanian-gatkSNPtimap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
97.5000
14100
asubramanian-gatkSNPtimap_l250_m2_e1homalt
29.9424
17.6072
100.0000
97.3595
312146031200
asubramanian-gatkSNPtimap_siren*
78.3158
64.4054
99.8903
68.2204
6463435721646227123
32.3944