PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85851-85900 / 86044 show all
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.2192
98.7929
99.6492
71.7503
3110383125119
81.8182
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
16.6667
100.0000
9.0909
84.9315
101100
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.4640
98.9336
100.0000
64.4882
167018167900
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
85.7143
93.7500
78.9474
97.3501
1511540
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.3178
91900
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
71.4286
00040
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.4286
60600
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.3498
98.7237
99.9839
45.5999
618880619311
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4061
98.8192
100.0000
47.1948
401748401900
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2451
98.5461
99.9540
42.2689
216932217211
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.0572
98.8725
99.2426
41.5382
1061112110614812
2.4691
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.8363
98.8582
98.8143
45.0033
6667776667801
1.2500
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
66.6667
100.0000
50.0000
83.3333
10111
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4451
98.8964
100.0000
34.3864
394344394600
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200*
92.9792
91.0891
94.9495
93.3557
9299453
60.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200het
93.0931
90.9091
95.3846
93.9309
6066233
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
50.0000
00020
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
95.5224
91.4286
100.0000
92.2892
3233200
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2920
98.7455
99.8446
31.3666
385749385661
16.6667
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2697
98.7490
99.7960
33.5412
244731244650
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.3658
98.8087
99.9291
27.0801
141017141011
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
93.8776
80900
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.1348
60700
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.4912
20200
asubramanian-gatkSNPtimap_l100_m0_e0*
46.8392
30.5957
99.8501
90.3797
6661151106661105
50.0000
asubramanian-gatkSNPtimap_l100_m0_e0het
49.6427
33.0401
99.7840
91.6649
462093634620105
50.0000
asubramanian-gatkSNPtimap_l100_m0_e0hetalt
35.2941
21.4286
100.0000
93.1818
311300
asubramanian-gatkSNPtimap_l100_m0_e0homalt
41.5410
26.2156
100.0000
85.1793
20385736203800
asubramanian-gatkSNPtimap_l100_m1_e0*
61.7256
44.6642
99.8787
83.4799
2140826523214042610
38.4615
asubramanian-gatkSNPtimap_l100_m1_e0het
64.3552
47.4851
99.8174
85.5215
1421815724142142610
38.4615
asubramanian-gatkSNPtimap_l100_m1_e0hetalt
51.2821
34.4828
100.0000
89.3617
10191000
asubramanian-gatkSNPtimap_l100_m1_e0homalt
57.1201
39.9777
100.0000
77.0416
718010780718000
asubramanian-gatkSNPtimap_l100_m2_e0*
62.4314
45.4117
99.8563
84.1830
2223426727222303212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e0het
65.0317
48.2333
99.7838
86.0511
1477015852147663212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e0hetalt
53.6585
36.6667
100.0000
89.6226
11191100
asubramanian-gatkSNPtimap_l100_m2_e0homalt
57.8604
40.7068
100.0000
78.4309
745310856745300
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e1het
65.2727
48.4981
99.7873
85.9875
1501515945150113212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e1hetalt
55.8140
38.7097
100.0000
88.7850
12191200