PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryType SubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85751-85800 / 86044 show all
asubramanian-gatkSNP*map_l250_m2_e0het
33.8604
20.4082
99.3440
98.5469
10604134106071
14.2857
asubramanian-gatkSNP*map_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNP*map_l250_m2_e0homalt
28.0410
16.3068
100.0000
97.5677
438224843800
asubramanian-gatkSNP*map_l250_m2_e1*
32.0765
19.1186
99.5437
98.3572
15276460152771
14.2857
asubramanian-gatkSNP*map_l250_m2_e1het
34.0104
20.5167
99.3560
98.5506
10804184108071
14.2857
asubramanian-gatkSNP*map_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNP*map_l250_m2_e1homalt
28.1922
16.4091
100.0000
97.5636
446227244600
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
asubramanian-gatkSNP*map_sirenhetalt
65.0000
48.1481
100.0000
84.2105
39423900
asubramanian-gatkSNP*map_sirenhomalt
73.1014
57.6093
99.9906
63.4885
31775233813176632
66.6667
asubramanian-gatkSNP*segdup*
98.1237
96.8005
99.4836
92.0357
271698982716314114
9.9291
asubramanian-gatkSNP*segduphet
98.0720
96.9394
99.2313
93.3046
16787530167811304
3.0769
asubramanian-gatkSNP*segduphetalt
92.3077
85.7143
100.0000
97.5309
61600
asubramanian-gatkSNP*segduphomalt
98.2111
96.5838
99.8941
88.4606
10376367103761110
90.9091
asubramanian-gatkSNP*segdupwithalt*
0.0000
100.0000
00000
asubramanian-gatkSNP*segdupwithalthet
0.0000
100.0000
00000
asubramanian-gatkSNP*segdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*segdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.3506
154315422
100.0000
asubramanian-gatkSNP*tech_badpromotershet
98.6842
97.4026
100.0000
51.9231
7527500
asubramanian-gatkSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
46.7105
7917922
100.0000
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192
asubramanian-gatkSNPti*het
99.0688
98.2225
99.9298
21.0842
125910522786125905588467
7.5792
asubramanian-gatkSNPti*hetalt
95.6522
94.5017
96.8310
46.4151
55032550181
5.5556
asubramanian-gatkSNPti*homalt
98.9721
97.9680
99.9969
16.0441
786720163187867112422
91.6667
asubramanian-gatkSNPtiHG002complexvar*
98.3380
96.7457
99.9835
17.8536
491890165464918308136
44.4444
asubramanian-gatkSNPtiHG002complexvarhet
98.4409
96.9492
99.9794
17.3446
30516396033051136321
33.3333
asubramanian-gatkSNPtiHG002complexvarhetalt
94.4724
90.8213
98.4293
40.4984
1881918830
0.0000
asubramanian-gatkSNPtiHG002complexvarhomalt
98.1740
96.4210
99.9920
18.6413
18653969241865291515
100.0000
asubramanian-gatkSNPtiHG002compoundhet*
98.1691
96.6358
99.7519
35.8566
16890588168884217
40.4762
asubramanian-gatkSNPtiHG002compoundhethet
98.1344
96.5702
99.7500
39.9164
917932691772314
60.8696
asubramanian-gatkSNPtiHG002compoundhethetalt
95.8808
94.4732
97.3310
25.3652
54732547150
0.0000
asubramanian-gatkSNPtiHG002compoundhethomalt
98.3931
96.8894
99.9442
30.6032
7164230716443
75.0000
asubramanian-gatkSNPtidecoy*
0.0000
100.0000
00000
asubramanian-gatkSNPtidecoyhet
0.0000
100.0000
00000
asubramanian-gatkSNPtidecoyhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtidecoyhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtifunc_cds*
99.6805
99.5721
99.7892
27.6472
137285913726291
3.4483
asubramanian-gatkSNPtifunc_cdshet
99.6530
99.6472
99.6589
31.5760
8474308472291
3.4483
asubramanian-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
asubramanian-gatkSNPtifunc_cdshomalt
99.7244
99.4502
100.0000
20.1522
524629524600
asubramanian-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7149
98.1219
99.3151
65.8879
3187613190226
27.2727
asubramanian-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6320
97.9249
99.3493
69.0808
1982421985135
38.4615
asubramanian-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
73.3333
00080
0.0000
asubramanian-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.1770
98.4477
99.9171
58.7551
120519120511
100.0000
asubramanian-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000