PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
1-50 / 86044 show all
gduggal-snapplatINDEL***
76.4210
69.0418
85.5664
67.7420
237878106664258555436146600
15.1328
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167
ckim-isaacSNP***
98.5357
97.1616
99.9494
15.9907
29679308670429685841504880
58.5106
anovak-vgINDEL**het
69.4961
61.0200
80.7068
58.0873
118460756731311723135716629
53.0312
anovak-vgINDELI1_5**
54.8287
54.8578
54.7996
53.4671
8265168013848446998259671
85.2662
asubramanian-gatkSNP***
98.9379
97.9985
99.8954
21.0150
29934806113929933433133150
4.7877
ciseli-customINDEL***
83.5453
82.5314
84.5844
60.0787
284352601862847185189036584
70.5030
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779
anovak-vgINDELI1_5*het
38.2803
26.6836
67.7044
67.2836
210915795025553121894021
32.9888
ckim-isaacSNP*HG002complexvar*
95.9550
92.3552
99.8467
16.9098
696714576716970671070847
79.1589
gduggal-snapplatINDEL**het
75.6756
70.3729
81.8427
68.5533
13661757516150007332802606
7.8305
gduggal-snapvardINDEL***
83.0264
83.4429
82.6139
57.1178
287491570453277556897651941
75.3030
ckim-isaacSNPti**
98.6272
97.3318
99.9576
14.8667
2029873556452030218862462
53.5963
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
mlin-fermikitSNP***
98.8629
98.2311
99.5029
16.3803
30006025403230005271499012200
81.3876
anovak-vgSNP***
98.4545
98.3357
98.5736
21.3437
30037965083829873484322718700
43.2600
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299
ckim-isaacSNP**het
98.6547
97.3796
99.9637
16.8583
182450549096182510166363
9.5023
gduggal-bwaplatINDEL***
92.6621
87.0843
99.0034
65.2816
3000424450029991730191851
61.3117
gduggal-bwavardINDEL***
87.3464
87.1769
87.5166
58.1126
300361441812993414269838856
91.0019
ghariani-varprowlINDEL***
87.2025
87.3272
87.0781
72.0067
300877436633006324461240345
90.4353
gduggal-snapplatINDELI1_5**
77.0401
71.8692
83.0128
69.8058
10828142383109381223831242
5.5489
mlin-fermikitSNP**het
98.7978
97.7460
99.8724
15.9070
1831370422311831279234046
1.9658
asubramanian-gatkSNP*map_l100_m2_e1*
61.2013
44.1254
99.8365
85.2564
3297841759329725414
25.9259
asubramanian-gatkSNP*map_l100_m2_e0*
60.9821
43.8984
99.8339
85.3165
3246941495324635414
25.9259
ckim-vqsrSNP***
99.2866
98.6511
99.9303
23.6837
30134154120430132722101144
6.8539
asubramanian-gatkSNP*map_l100_m1_e0*
60.2018
43.0908
99.8527
84.6729
3119941204311934612
26.0870
gduggal-snapplatSNP***
99.0030
98.6815
99.3266
26.8746
3014360402743015151204422819
13.7902
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
67.1528
57.9879
79.7584
80.2389
547693968061674156524576
29.2359
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192
ckim-isaacSNP*map_siren*
84.8645
73.7800
99.8686
51.5315
1078873834110790014241
28.8732
ckim-vqsrSNP*map_siren*
85.1088
74.3093
99.5811
71.1680
1086613756710864145731
6.7834
ckim-isaacSNP**homalt
98.3805
96.8182
99.9940
14.4545
11426123755011426686950
72.4638
mlin-fermikitSNP*map_siren*
83.3638
74.6157
94.4357
47.0930
1091093711910909464285503
85.6098
ckim-isaacSNPtiHG002complexvar*
96.1858
92.7592
99.8753
15.7158
47162236815471809589446
75.7216
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
asubramanian-gatkSNPtimap_siren*
78.3158
64.4054
99.8903
68.2204
6463435721646227123
32.3944
anovak-vgSNP**het
98.0636
98.0936
98.0337
24.0083
18378833571818289093668413178
35.9230
ciseli-customSNP***
97.7648
98.8356
96.7169
21.5138
301906535569300607210204111838
11.6012
anovak-vgSNPti**
98.4812
98.2960
98.6672
19.8346
20499803553820437292760712786
46.3143
asubramanian-gatkSNP**het
98.9725
98.1066
99.8538
23.0377
18381133547418379992691109
4.0505
gduggal-bwaplatSNPti**
99.0047
98.3196
99.6994
24.2468
20504673504420508046183880
14.2326
gduggal-bwaplatSNP**het
98.8209
98.1336
99.5179
30.8495
183861934968183950089121113
12.4888
ckim-isaacSNP*HG002complexvarhet
96.2337
92.7890
99.9440
16.5252
4319333356743223024235
14.4628
gduggal-snapplatINDEL**homalt
81.6385
73.6219
91.6144
63.4553
92154330189939790983079
33.8426
gduggal-snapvardSNP***
99.0871
98.9341
99.2406
23.7872
3022073325603000636229623691
16.0744
gduggal-snapfbINDEL***
92.2602
90.5733
94.0112
57.2799
31206332479322983205759778
47.5237
asubramanian-gatkSNP*map_l125_m2_e1*
47.9740
31.5792
99.7724
91.5607
149063229614903348
23.5294