PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
gduggal-bwavardINDEL*HG002compoundhet*
14.6648
14.4226
14.9152
58.8895
43212563943292469523984
97.1209
asubramanian-gatkSNP*HG002complexvar*
98.2310
96.5837
99.9354
19.5730
7286092577272846647154
11.4650
ckim-isaacSNP*map_l100_m2_e0*
78.8251
65.1290
99.8156
65.2970
4817225792481798922
24.7191
jpowers-varprowlINDEL*HG002compoundhet*
14.0649
13.8284
14.3095
60.1145
41432581741262470824326
98.4539
gduggal-bwaplatSNP*map_siren*
90.0933
82.3317
99.4705
71.0074
12039225836120427641167
26.0530
ckim-isaacSNP*map_l100_m2_e1*
78.8815
65.2060
99.8157
65.2814
4873326004487409022
24.4444
ckim-vqsrSNPti**
99.3455
98.7474
99.9510
21.8102
2059387261242059330100989
8.8206
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
mlin-fermikitSNP*map_sirenhet
82.6394
70.9993
98.8447
48.1176
64603263886459575518
2.3841
gduggal-snapplatSNP**het
98.7739
98.5851
98.9633
30.9812
1847092265091848114193602442
12.6136
asubramanian-gatkSNPtimap_l100_m1_e0*
61.7256
44.6642
99.8787
83.4799
2140826523214042610
38.4615
asubramanian-gatkSNPtimap_l100_m2_e0*
62.4314
45.4117
99.8563
84.1830
2223426727222303212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
ckim-vqsrSNP*map_l100_m1_e0*
76.6064
62.3814
99.2353
82.7403
45166272374515834814
4.0230
ciseli-customINDEL*HG002compoundhet*
10.2161
9.0332
11.7555
64.4950
27062725034482588322293
86.1299
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
72.8701
70.9790
74.8646
68.2103
6703927410796292673520426
76.4017
ckim-vqsrSNP*map_l100_m2_e0*
77.0107
62.9198
99.2344
83.7056
46538274264653035916
4.4568
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.0113
70.9589
75.1858
71.6028
6702027429669562209821721
98.2940
ckim-vqsrSNP*map_l100_m2_e1*
77.1389
63.0879
99.2421
83.6761
47150275874714236016
4.4444
gduggal-snapplatINDELD1_5**
84.8354
80.9636
89.0961
66.8161
11881027935139871171184621
26.9950
gduggal-snapvardINDEL**homalt
86.7363
77.5779
98.3465
41.7135
97105280669962416751571
93.7910
mlin-fermikitSNPti*het
98.8419
97.7886
99.9182
14.5462
1253549283481253519102632
3.1189
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
mlin-fermikitSNP*map_l100_m1_e0*
72.2095
59.9657
90.7360
51.7425
43417289864340944323924
88.5379
mlin-fermikitSNP*map_l100_m2_e0*
72.7370
60.6281
90.8897
55.5979
44843291214483544943956
88.0285
gduggal-bwavardSNP***
99.3249
99.0431
99.6083
22.9016
3025405292293004827118173477
29.4237
mlin-fermikitSNP*map_l100_m2_e1*
72.9339
60.8681
90.9660
55.6863
45491292464548345173972
87.9345
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
ciseli-customSNP**het
97.1375
98.3979
95.9090
22.9747
184358430017183723578367939
1.1982
ckim-isaacSNPtv**
98.3371
96.7926
99.9317
18.3312
93859631102938905642418
65.1090
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
ckim-isaacSNPti*het
98.7325
97.5284
99.9667
15.6908
125021431683125052541731
7.4341
asubramanian-gatkSNP*map_l125_m2_e0*
47.7392
31.3764
99.7686
91.5938
146603206314657348
23.5294
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
asubramanian-gatkSNP*map_l125_m2_e1*
47.9740
31.5792
99.7724
91.5607
149063229614903348
23.5294
gduggal-snapfbINDEL***
92.2602
90.5733
94.0112
57.2799
31206332479322983205759778
47.5237
gduggal-snapvardSNP***
99.0871
98.9341
99.2406
23.7872
3022073325603000636229623691
16.0744
gduggal-snapplatINDEL**homalt
81.6385
73.6219
91.6144
63.4553
92154330189939790983079
33.8426
ckim-isaacSNP*HG002complexvarhet
96.2337
92.7890
99.9440
16.5252
4319333356743223024235
14.4628
gduggal-bwaplatSNP**het
98.8209
98.1336
99.5179
30.8495
183861934968183950089121113
12.4888