PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
151-200 / 86044 show all | |||||||||||||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8558 | 99.8558 | 99.8558 | 64.1880 | 1385 | 2 | 1385 | 2 | 1 | 50.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8619 | 99.8160 | 99.9079 | 64.2822 | 2170 | 4 | 2170 | 2 | 1 | 50.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8959 | 99.7921 | 100.0000 | 53.7572 | 480 | 1 | 480 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6495 | 99.7661 | 99.5333 | 55.1309 | 853 | 2 | 853 | 4 | 1 | 25.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7381 | 99.7754 | 99.7008 | 54.7087 | 1333 | 3 | 1333 | 4 | 1 | 25.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7694 | 99.7050 | 99.8338 | 75.7174 | 5407 | 16 | 5407 | 9 | 2 | 22.2222 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2280 | 15 | 0 | 15 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.5504 | 99.5402 | 99.5606 | 75.8969 | 14504 | 67 | 14502 | 64 | 17 | 26.5625 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8811 | 99.8613 | 99.9009 | 61.7921 | 10083 | 14 | 10083 | 10 | 2 | 20.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.8491 | 99.8406 | 99.8576 | 65.2848 | 17540 | 28 | 17527 | 25 | 17 | 68.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8590 | 99.8446 | 99.8734 | 64.1005 | 27635 | 43 | 27622 | 35 | 19 | 54.2857 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 66.9401 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3435 | 99.1935 | 99.4939 | 70.5690 | 984 | 8 | 983 | 5 | 1 | 20.0000 | |
rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.4386 | 99.3404 | 99.5370 | 69.4360 | 1506 | 10 | 1505 | 7 | 2 | 28.5714 | |
rpoplin-dv42 | SNP | tv | func_cds | homalt | 99.9706 | 99.9413 | 100.0000 | 27.8695 | 1703 | 1 | 1703 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 30.5098 | 2655 | 2 | 2654 | 4 | 1 | 25.0000 | |
rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
rpoplin-dv42 | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | HG002compoundhet | homalt | 99.7491 | 99.8229 | 99.6753 | 42.8668 | 3382 | 6 | 3377 | 11 | 9 | 81.8182 | |
rpoplin-dv42 | SNP | tv | HG002compoundhet | hetalt | 99.9420 | 99.8840 | 100.0000 | 22.1519 | 861 | 1 | 861 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | HG002compoundhet | het | 99.5284 | 99.3794 | 99.6779 | 54.5836 | 4644 | 29 | 4642 | 15 | 10 | 66.6667 | |
rpoplin-dv42 | SNP | tv | HG002compoundhet | * | 99.6523 | 99.5965 | 99.7081 | 48.4905 | 8887 | 36 | 8880 | 26 | 19 | 73.0769 | |
rpoplin-dv42 | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.9201 | 99.9569 | 22.8530 | 95035 | 76 | 95011 | 41 | 37 | 90.2439 | |
rpoplin-dv42 | SNP | tv | HG002complexvar | hetalt | 99.1974 | 99.6774 | 98.7220 | 36.2525 | 309 | 1 | 309 | 4 | 4 | 100.0000 | |
rpoplin-dv42 | SNP | tv | HG002complexvar | het | 99.8928 | 99.8249 | 99.9608 | 21.2882 | 150467 | 264 | 150382 | 59 | 46 | 77.9661 | |
rpoplin-dv42 | SNP | tv | HG002complexvar | * | 99.9096 | 99.8615 | 99.9577 | 21.9240 | 245811 | 341 | 245702 | 104 | 87 | 83.6538 | |
rpoplin-dv42 | SNP | tv | * | homalt | 99.9702 | 99.9650 | 99.9753 | 20.9652 | 376991 | 132 | 376970 | 93 | 51 | 54.8387 | |
rpoplin-dv42 | SNP | tv | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
rpoplin-dv42 | SNP | tv | * | het | 99.9398 | 99.9275 | 99.9522 | 22.4174 | 591267 | 429 | 591187 | 283 | 104 | 36.7491 | |
rpoplin-dv42 | SNP | tv | * | * | 99.9512 | 99.9420 | 99.9604 | 21.8980 | 969128 | 562 | 969027 | 384 | 163 | 42.4479 | |
raldana-dualsentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 50.6329 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 49.6454 | 70 | 2 | 70 | 1 | 1 | 100.0000 |