PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
ghariani-varprowlSNPtvtech_badpromotershet
95.6522
100.0000
91.6667
63.2653
3303331
33.3333
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8249
99.4525
98.2052
75.0047
908350908316610
6.0241
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
24.0000
100.0000
13.6364
80.3571
303190
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.1111
30400
bgallagher-sentieonSNPtvmap_l125_m1_e0hetalt
96.5517
93.3333
100.0000
71.4286
2822800
mlin-fermikitSNPtvmap_l125_m2_e0hetalt
46.1538
30.0000
100.0000
76.3158
921900
cchapple-customSNPtvsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvmap_l100_m2_e0hetalt
81.6901
69.0476
100.0000
89.1791
29132900
ckim-dragenSNPtvdecoyhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvmap_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
ckim-isaacSNPtvmap_l150_m0_e0hetalt
0.0000
100.0000
03000
dgrover-gatkSNPtvHG002compoundhethetalt
99.8257
99.6520
100.0000
22.7518
859385900
gduggal-bwaplatSNPtvHG002complexvarhetalt
90.9054
83.8710
99.2278
44.0605
2605025722
100.0000
ghariani-varprowlSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7163
99.4597
99.9741
59.5798
386621386611
100.0000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtvHG002complexvarhomalt
99.9458
99.9043
99.9874
22.8056
9502091950051210
83.3333
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5646
99.1989
99.9329
79.3662
148612149011
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4631
98.9319
100.0000
77.5605
148216150300
bgallagher-sentieonSNPtvmap_l125_m1_e0homalt
99.7095
99.5734
99.8460
64.1604
583525583596
66.6667
mlin-fermikitSNPtvmap_l125_m2_e0homalt
64.7739
58.2018
73.0192
57.0520
35022515350212941217
94.0495
cchapple-customSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvmap_l100_m2_e0homalt
87.6918
78.6086
99.1482
62.9624
7243197172176261
98.3871
ckim-dragenSNPtvdecoyhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvmap_l150_m0_e0homalt
99.6608
99.5482
99.7736
73.0800
13226132231
33.3333
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.4082
90900
rpoplin-dv42SNPtvmap_l150_m2_e1homalt
99.2828
98.7905
99.7801
74.0325
408450408499
100.0000
ckim-isaacSNPtvmap_l150_m0_e0homalt
57.8158
40.6627
100.0000
71.4889
54078854000
dgrover-gatkSNPtvHG002compoundhethomalt
99.8671
99.9115
99.8228
42.6879
33853338065
83.3333
gduggal-bwaplatSNPtvHG002complexvarhomalt
97.7875
95.7534
99.9100
24.5806
910724039909998277
93.9024
ghariani-varprowlSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
55.1724
3813810
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50*
98.2548
98.6087
97.9035
45.6956
34024834097333
45.2055
astatham-gatkSNPtvHG002compoundhet*
99.1767
98.5543
99.8069
49.0836
879412987891716
94.1176
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0937
98.6068
97.5858
73.2956
143682031455236014
3.8889
bgallagher-sentieonSNPtvmap_l125_m2_e0*
99.1716
99.4784
98.8667
73.4826
16403861640118828
14.8936
mlin-fermikitSNPtvmap_l125_m2_e1*
62.9750
49.8289
85.5434
62.7659
83008357829614021229
87.6605
cchapple-customSNPtvtech_badpromoters*
96.5228
97.2222
95.8333
57.6471
7026931
33.3333
ndellapenna-hhgaSNPtvmap_l100_m0_e0*
98.9920
98.3490
99.6435
65.9868
10901183109013917
43.5897
qzeng-customSNPtvmap_l100_m2_e1*
88.3100
80.2832
98.1201
78.5916
20298498520251388306
78.8660