PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85801-85850 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | * | 99.0281 | 98.8740 | 99.1827 | 80.1043 | 4127 | 47 | 4126 | 34 | 6 | 17.6471 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | het | 98.7997 | 98.4523 | 99.1495 | 80.8249 | 2799 | 44 | 2798 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.2644 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | * | 99.3066 | 99.0927 | 99.5213 | 73.8197 | 10813 | 99 | 10811 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | het | 99.0753 | 98.7331 | 99.4200 | 74.8128 | 6858 | 88 | 6856 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.8212 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | * | 99.3292 | 99.1193 | 99.5400 | 75.2398 | 11255 | 100 | 11253 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | het | 99.1075 | 98.7728 | 99.4445 | 75.8631 | 7163 | 89 | 7161 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 73.9873 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | * | 99.3334 | 99.1219 | 99.5459 | 75.2491 | 11401 | 101 | 11399 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | het | 99.1123 | 98.7752 | 99.4518 | 75.8770 | 7258 | 90 | 7256 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 73.9872 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | het | 97.7193 | 97.3776 | 98.0634 | 92.6176 | 557 | 15 | 557 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.5494 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | * | 98.5782 | 98.2244 | 98.9346 | 87.7185 | 2600 | 47 | 2600 | 28 | 6 | 21.4286 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | homalt | 99.4179 | 99.7664 | 99.0719 | 87.2031 | 854 | 2 | 854 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | * | 98.5906 | 98.2998 | 98.8831 | 88.2437 | 2833 | 49 | 2833 | 32 | 7 | 21.8750 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | het | 98.1856 | 97.6289 | 98.7487 | 88.3106 | 1894 | 46 | 1894 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | homalt | 99.4146 | 99.6798 | 99.1507 | 88.0623 | 934 | 3 | 934 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | * | 98.6071 | 98.3196 | 98.8962 | 88.3190 | 2867 | 49 | 2867 | 32 | 7 | 21.8750 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | het | 98.2088 | 97.6590 | 98.7648 | 88.3806 | 1919 | 46 | 1919 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | homalt | 99.4201 | 99.6829 | 99.1588 | 88.1481 | 943 | 3 | 943 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_siren | * | 99.7188 | 99.5885 | 99.8494 | 56.2301 | 45741 | 189 | 45734 | 69 | 22 | 31.8841 | |
| hfeng-pmm1 | SNP | tv | map_siren | het | 99.6130 | 99.4093 | 99.8175 | 56.2607 | 28440 | 169 | 28435 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_siren | homalt | 99.8956 | 99.8898 | 99.9014 | 56.0205 | 17221 | 19 | 17219 | 17 | 8 | 47.0588 | |
| hfeng-pmm1 | SNP | tv | segdup | * | 99.7305 | 99.7773 | 99.6837 | 90.5181 | 8513 | 19 | 8509 | 27 | 6 | 22.2222 | |
| hfeng-pmm1 | SNP | tv | segdup | het | 99.6406 | 99.6785 | 99.6028 | 90.6534 | 5270 | 17 | 5266 | 21 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 90.2264 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 49.6454 | 71 | 1 | 71 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 40.7407 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 55.1724 | 39 | 0 | 39 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | * | * | 98.9190 | 99.7874 | 98.0655 | 30.2667 | 967620 | 2062 | 967900 | 19093 | 1348 | 7.0602 | |
| ghariani-varprowl | SNP | tv | * | het | 98.5275 | 99.8276 | 97.2608 | 33.9264 | 590670 | 1020 | 590877 | 16641 | 154 | 0.9254 | |