PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85751-85800 / 86044 show all | |||||||||||||||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 37.0751 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 78.8732 | 66.6667 | 96.5517 | 90.6452 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.8621 | 61.1111 | 100.0000 | 90.0901 | 22 | 14 | 22 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4759 | 99.0435 | 99.9122 | 35.0997 | 3417 | 33 | 3414 | 3 | 0 | 0.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2232 | 98.5968 | 99.8577 | 35.0385 | 2108 | 30 | 2105 | 3 | 0 | 0.0000 | |
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 35.1338 | 1309 | 2 | 1309 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | het | 99.2295 | 98.9754 | 99.4850 | 70.4702 | 7148 | 74 | 7147 | 37 | 11 | 29.7297 | |
hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.4385 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |
hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | * | 99.6055 | 99.4531 | 99.7584 | 64.1006 | 24367 | 134 | 24363 | 59 | 17 | 28.8136 | |
hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | het | 99.4603 | 99.2216 | 99.7001 | 64.9458 | 15297 | 120 | 15293 | 46 | 12 | 26.0870 | |
hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.8362 | 41 | 0 | 41 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | homalt | 99.8507 | 99.8452 | 99.8562 | 62.4720 | 9029 | 14 | 9029 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | * | 99.6119 | 99.4647 | 99.7596 | 65.8235 | 24899 | 134 | 24895 | 60 | 17 | 28.3333 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | het | 99.4695 | 99.2394 | 99.7006 | 66.3242 | 15657 | 120 | 15653 | 47 | 12 | 25.5319 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.6802 | 42 | 0 | 42 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8481 | 99.8589 | 64.8359 | 9200 | 14 | 9200 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | * | 99.6118 | 99.4660 | 99.7580 | 65.8552 | 25148 | 135 | 25144 | 61 | 17 | 27.8689 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | het | 99.4686 | 99.2408 | 99.6974 | 66.3712 | 15817 | 121 | 15813 | 48 | 12 | 25.0000 | |
hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2828 | 43 | 0 | 43 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8495 | 99.8602 | 64.8422 | 9288 | 14 | 9288 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | * | 99.1084 | 98.9142 | 99.3035 | 75.2093 | 6559 | 72 | 6558 | 46 | 13 | 28.2609 | |
hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | het | 98.9058 | 98.5912 | 99.2223 | 76.3803 | 4339 | 62 | 4338 | 34 | 9 | 26.4706 | |
hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | homalt | 99.5050 | 99.5498 | 99.4602 | 72.4501 | 2211 | 10 | 2211 | 12 | 4 | 33.3333 | |
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | * | 99.4714 | 99.2945 | 99.6491 | 69.3117 | 15903 | 113 | 15901 | 56 | 16 | 28.5714 | |
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | het | 99.2869 | 99.0026 | 99.5728 | 70.2971 | 10025 | 101 | 10023 | 43 | 11 | 25.5814 | |
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.6119 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | * | 99.4866 | 99.3147 | 99.6592 | 71.0071 | 16376 | 113 | 16374 | 56 | 16 | 28.5714 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | het | 99.3085 | 99.0328 | 99.5858 | 71.6339 | 10341 | 101 | 10339 | 43 | 11 | 25.5814 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | homalt | 99.7923 | 99.8006 | 99.7840 | 69.7785 | 6005 | 12 | 6005 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | * | 99.4888 | 99.3156 | 99.6626 | 71.0607 | 16543 | 114 | 16541 | 56 | 16 | 28.5714 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | het | 99.3110 | 99.0335 | 99.5902 | 71.6922 | 10451 | 102 | 10449 | 43 | 11 | 25.5814 | |
hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | homalt | 99.7942 | 99.8024 | 99.7860 | 69.8227 | 6062 | 12 | 6062 | 13 | 5 | 38.4615 |