PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
85951-86000 / 86044 show all
gduggal-snapplatSNP***
99.0030
98.6815
99.3266
26.8746
3014360402743015151204422819
13.7902
gduggal-snapvardINDEL*HG002compoundhet*
47.5012
42.0784
54.5285
56.5286
1260517351246302053916069
78.2365
gduggal-snapfbINDEL***
92.2602
90.5733
94.0112
57.2799
31206332479322983205759778
47.5237
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.6453
92.3929
68.4589
73.0930
445993672447162060220414
99.0875
gduggal-snapfbSNPtv**
98.8423
99.7914
97.9112
28.0235
967675202396803620652782
3.7866
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
80.8597
97.6155
69.0135
75.3261
471201151472482121420445
96.3750
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
80.6313
97.3607
68.8080
74.0750
469971274470862134520055
93.9564
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
75.4546
74.3184
76.6261
71.7256
7019324256701322139320093
93.9232
anovak-vgSNP*map_sirenhet
84.8820
91.5981
79.0836
63.1144
83346764582394217924974
22.8249
ciseli-customSNPtiHG002complexvar*
96.3915
97.0905
95.7026
18.7897
49364414793488642219425540
25.2484
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.0113
70.9589
75.1858
71.6028
6702027429669562209821721
98.2940
anovak-vgSNP*map_siren*
88.0035
90.6441
85.5124
59.7358
13254713681130863221715290
23.8600
gduggal-snapvardSNP**het
98.8907
98.9717
98.8098
27.4520
1854334192661842523221943216
14.4904
jpowers-varprowlINDEL*HG002compoundhethet
23.2624
81.2408
13.5747
59.7974
332676835022229622169
99.4304
gduggal-snapplatINDELI1_5**
77.0401
71.8692
83.0128
69.8058
10828142383109381223831242
5.5489
eyeh-varpipeSNPtv*het
98.0748
99.9564
96.2628
25.2886
59144625858337122648112
0.4945
ghariani-varprowlINDEL*HG002compoundhethet
24.1441
85.8818
14.0465
61.8818
351657837082269022434
98.8717
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.4538
73.6260
75.3005
77.0932
6953924910694702278721717
95.3043
eyeh-varpipeSNPtv**
98.8030
99.9607
97.6718
23.4743
96931738195864222851215
0.9409
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
gduggal-snapvardSNP***
99.0871
98.9341
99.2406
23.7872
3022073325603000636229623691
16.0744
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
ciseli-customSNP**homalt
98.7740
99.5427
98.0170
19.0299
1174765539711681212363210880
46.0393
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
65.7662
77.6219
57.0522
44.3331
113463271317292388520828
87.2012
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.3999
51.2849
57.9178
44.7526
1943818464330232399420921
87.1926
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*HG002compoundhethet
23.2106
89.3014
13.3387
58.9532
365643837932464323937
97.1351
gduggal-bwavardINDEL*HG002compoundhet*
14.6648
14.4226
14.9152
58.8895
43212563943292469523984
97.1209
jpowers-varprowlINDEL*HG002compoundhet*
14.0649
13.8284
14.3095
60.1145
41432581741262470824326
98.4539
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*HG002compoundhet*
14.6445
14.5761
14.7135
73.0382
43672559343342512224561
97.7669
ciseli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.7262
74.1156
73.3408
74.2090
7000024447701712550716983
66.5817
ciseli-customINDEL**homalt
84.6742
88.5829
81.0959
56.4739
110881142911106442579222639
87.7753
ciseli-customINDEL*HG002compoundhet*
10.2161
9.0332
11.7555
64.4950
27062725034482588322293
86.1299
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948