PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
201-250 / 86044 show all
ckim-gatkINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_diTR_51to200*
0.0000
100.0000
00000
rpoplin-dv42INDELC6_15map_l125_m2_e0*
0.0000
100.0000
00000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9933
10100
ckim-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
95.9732
62600
ckim-isaacINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
0.0000
0.0000
10000
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
95.9596
42400
ckim-isaacINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-isaacSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15map_l150_m2_e0*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9141
1101100
ckim-vqsrINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l150_m2_e0*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
dgrover-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8652
10100
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8675
20200
egarrison-hhgaINDELC16_PLUSmap_l100_m2_e1*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5segdup*
0.0000
100.0000
00000
egarrison-hhgaINDELI1_5decoy*
0.0000
100.0000
00000
eyeh-varpipeINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
0.0000
100.0000
96.7391
00300
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5map_l125_m2_e0*
0.0000
100.0000
00000
gduggal-bwaplatINDELC16_PLUSmap_l100_m1_e0*
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELC1_5map_siren*
0.0000
100.0000
00000
gduggal-bwaplatINDELD6_15map_l250_m0_e0*
0.0000
100.0000
06000
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
02000
gduggal-bwaplatSNPtvdecoy*
0.0000
100.0000
00000
gduggal-snapfbINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELC1_5map_l150_m1_e0*
0.0000
100.0000
00000
gduggal-snapfbINDELD16_PLUSfunc_cds*
0.0000
0.0000
0.0000
012000
gduggal-snapplatINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC1_5map_l150_m1_e0*
0.0000
100.0000
00000
gduggal-snapplatINDELD16_PLUSfunc_cds*
0.0000
0.0000
0.0000
012000
gduggal-snapvardINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ghariani-varprowlINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_l125_m2_e0*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9130
10100
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
hfeng-pmm1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000