PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
151-200 / 86044 show all
jmaeng-gatkINDELC1_5HG002complexvarhomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.5052
1601600
jmaeng-gatkINDELI6_15map_l250_m1_e0homalt
80.0000
66.6667
100.0000
97.7778
21200
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
100.0000
00000
jpowers-varprowlINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUSmap_l250_m0_e0*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
astatham-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9347
1001000
astatham-gatkINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5map_l125_m2_e1*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.2925
60600
ltrigg-rtg1INDELC6_15map_l100_m2_e0*
0.0000
100.0000
00000
ltrigg-rtg1INDELD16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
33.3333
40400
astatham-gatkINDELI1_5decoy*
0.0000
100.0000
00000
ltrigg-rtg1INDELI6_15decoy*
0.0000
100.0000
00000
astatham-gatkSNPtvdecoy*
0.0000
100.0000
00000
asubramanian-gatkINDELC6_15decoy*
0.0000
100.0000
00000
ltrigg-rtg2INDELC1_5map_l250_m2_e0*
0.0000
100.0000
00000
asubramanian-gatkINDELI16_PLUSdecoy*
0.0000
100.0000
00000
ltrigg-rtg2INDELD6_15segdupwithalt*
0.0000
100.0000
00000
asubramanian-gatkSNPtidecoy*
0.0000
100.0000
00000
ltrigg-rtg2INDELI6_15map_l125_m1_e0*
95.0495
90.5660
100.0000
85.6250
4854600
bgallagher-sentieonINDELC1_5decoy*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELC6_15lowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9097
10100
mlin-fermikitINDELD6_15func_cds*
97.6190
95.3488
100.0000
48.7500
4124100
bgallagher-sentieonSNP*decoy*
0.0000
100.0000
00000
cchapple-customINDELC16_PLUSdecoy*
0.0000
100.0000
00000
ndellapenna-hhgaINDELC16_PLUSHG002compoundhet*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9664
40300
ndellapenna-hhgaINDELC6_15map_l100_m0_e0*
0.0000
100.0000
00000
cchapple-customINDELI6_15decoy*
0.0000
100.0000
00000
qzeng-customINDELC6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ciseli-customSNPtisegdupwithalt*
0.0000
100.0000
00000
qzeng-customSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00200
ckim-dragenINDELC16_PLUSlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC1_5map_l250_m2_e0*
0.0000
100.0000
00000
raldana-dualsentieonINDEL*tech_badpromoters*
97.2973
94.7368
100.0000
53.8462
7247200
raldana-dualsentieonINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
raldana-dualsentieonINDELC6_15map_l100_m0_e0*
0.0000
0.0000
0.0000
00000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.9925
40400
raldana-dualsentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
89.3617
80.7692
100.0000
90.4110
2152100
raldana-dualsentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-gatkINDELC16_PLUSmap_l150_m2_e0*
0.0000
0.0000
0.0000
00000