PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
101-150 / 86044 show all
gduggal-snapfbINDELD16_PLUSdecoyhomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELI16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC1_5map_l150_m0_e0homalt
0.0000
100.0000
00000
gduggal-snapplatINDELD16_PLUSdecoyhomalt
0.0000
0.0000
0.0000
02000
gduggal-snapplatINDELD6_15map_l125_m0_e0homalt
66.6667
50.0000
100.0000
95.0617
66400
gduggal-snapplatINDELI16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
02000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapvardINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
100.0000
00000
gduggal-snapvardINDELC1_5map_l150_m0_e0homalt
0.0000
0.0000
100.0000
96.7949
00500
gduggal-snapvardINDELD16_PLUSdecoyhomalt
0.0000
100.0000
02000
gduggal-snapvardINDELD6_15map_l125_m0_e0homalt
73.6842
58.3333
100.0000
85.4839
75900
gduggal-snapvardINDELI16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_l125_m1_e0homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSmap_l150_m2_e1homalt
0.0000
100.0000
03000
hfeng-pmm1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m1_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_sirenhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8165
99.6337
100.0000
76.1717
544254400
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9253
30300
hfeng-pmm2INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELC1_5map_l125_m0_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
hfeng-pmm2INDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
88.7255
2312300
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e1homalt
0.0000
100.0000
00000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
hfeng-pmm3INDELC16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5map_l125_m2_e1homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELD6_15map_l100_m2_e1homalt
98.4848
97.0149
100.0000
84.0686
6526500
hfeng-pmm3INDELI16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.0588
20200
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
88.8889
80.0000
100.0000
99.5708
41400
jlack-gatkINDELC16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC1_5map_l125_m2_e1homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.3333
20200
jli-customINDELC16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00000
jli-customINDELC1_5map_sirenhomalt
0.0000
0.0000
0.0000
00000
jli-customINDELI6_15map_l125_m2_e1homalt
96.5517
93.3333
100.0000
92.0904
1411400
jli-customSNPtidecoyhomalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.6441
17598175900