PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
51-100 / 86044 show all
raldana-dualsentieonINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonINDELC6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD6_15map_l150_m1_e0homalt
96.0000
92.3077
100.0000
91.8919
2422400
raldana-dualsentieonINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.3684
10100
ckim-dragenINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
29.1667
119011900
ckim-dragenSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.6781
17040170400
ckim-gatkINDELC16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC6_15map_l125_m1_e0homalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15map_l150_m1_e0homalt
92.3077
85.7143
100.0000
96.2264
61600
rpoplin-dv42INDELI16_PLUSmap_l100_m1_e0homalt
88.8889
80.0000
100.0000
85.1852
41400
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7998
99.6004
100.0000
54.6227
22439224300
ckim-isaacINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSmap_l150_m1_e0homalt
0.0000
100.0000
00000
ckim-isaacINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
85.7143
75.0000
100.0000
81.2500
31300
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15map_l150_m1_e0homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.3810
7407400
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0homalt
100.0000
100.0000
100.0000
98.2857
30300
dgrover-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l150_m1_e0homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELD6_15map_l150_m1_e0homalt
96.0000
92.3077
100.0000
90.0000
2422400
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.5094
4904900
dgrover-gatkSNPtvdecoyhomalt
0.0000
100.0000
00000
egarrison-hhgaINDELC16_PLUSmap_l100_m2_e0homalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_sirenhomalt
0.0000
100.0000
00000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
eyeh-varpipeINDELC1_5map_l150_m1_e0homalt
0.0000
0.0000
100.0000
95.6811
001300
eyeh-varpipeINDELD16_PLUSdecoyhomalt
0.0000
100.0000
02000
eyeh-varpipeINDELI16_PLUSmap_l250_m2_e1homalt
0.0000
100.0000
00000
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5map_l125_m1_e0homalt
0.0000
100.0000
00000
gduggal-bwafbSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
46.0526
4104100
gduggal-bwaplatINDELC16_PLUSmap_l100_m0_e0homalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELC1_5map_l250_m2_e1homalt
0.0000
100.0000
00000
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-bwaplatINDELD6_15map_l150_m2_e1homalt
79.1667
65.5172
100.0000
90.2564
19101900
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-bwavardINDELC16_PLUSmap_l100_m1_e0homalt
0.0000
100.0000
00000
gduggal-bwavardINDELC1_5map_l250_m2_e1homalt
0.0000
0.0000
100.0000
97.8261
00200
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
100.0000
99.9800
00300
gduggal-bwavardINDELD6_15map_l125_m2_e1homalt
87.8788
78.3784
100.0000
84.8315
2982700
gduggal-bwavardSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELC1_5map_l150_m0_e0homalt
0.0000
100.0000
00000