PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
egarrison-hhgaINDELD6_15map_l150_m0_e0het
95.2267
95.0000
95.4545
93.3333
1912111
100.0000
eyeh-varpipeINDELD16_PLUSdecoyhet
28.5714
25.0000
33.3333
98.0892
13122
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0het
80.3709
68.9655
96.2963
85.1648
2092611
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
90.7127
92.2652
89.2116
81.5184
334282152626
100.0000
jli-customINDELI6_15map_l125_m2_e1het
87.2727
80.0000
96.0000
91.1348
2462411
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.4666
99.1489
99.7863
69.8065
466446711
100.0000
jmaeng-gatkINDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
98.9437
22211
100.0000
astatham-gatkINDELD16_PLUSHG002compoundhethetalt
97.0065
94.5539
99.5897
26.4429
1823105194288
100.0000
astatham-gatkINDELI1_5HG002compoundhethetalt
97.1718
94.5245
99.9718
56.8751
105656121062633
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.2350
94.7249
99.8818
43.0518
3340186338144
100.0000
asubramanian-gatkINDELI16_PLUSHG002compoundhethetalt
94.3857
90.2532
98.9147
46.6501
188920419142121
100.0000
ltrigg-rtg2SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
37.5000
206120733
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
bgallagher-sentieonINDELD6_15HG002compoundhethetalt
96.6337
93.8535
99.5837
23.7576
765050176543232
100.0000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8850
94.2337
99.6899
70.3721
6213864322
100.0000
mlin-fermikitINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
80.8856
69.5341
96.6667
66.1290
1948520377
100.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
qzeng-customSNP*HG002compoundhethetalt
98.5292
97.2158
99.8786
21.9697
8382482311
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0901
96.9697
99.2366
79.4349
128413011
100.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2055
93.3713
99.2172
39.1486
180312820281616
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0896
98.3925
99.7967
32.3556
146924147333
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1287
94.5229
99.8822
39.6374
167497169622
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.8310
87.1028
99.3658
71.0526
4666947033
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
93.9805
88.9241
99.6466
70.1162
2813528211
100.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.3918
87.9802
99.5128
30.5121
1603219163488
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.8904
94.5946
97.2222
60.8696
3523511
100.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.8037
88.4906
99.7955
45.1178
4696148811
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.4946
92.1026
99.1461
40.7199
89877104599
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.1559
97.0803
99.2556
71.3982
3991240033
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.5220
86.1761
99.8768
41.7921
77312481111
100.0000
egarrison-hhgaSNP*map_l100_m1_e0hetalt
95.0000
92.6829
97.4359
77.5862
3833811
100.0000
egarrison-hhgaSNPtimap_sirenhetalt
95.4955
92.9825
98.1481
75.0000
5345311
100.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
46.3980
31.1475
90.9091
61.1765
19423033
100.0000
gduggal-bwafbINDELD16_PLUSHG002complexvarhetalt
81.6709
72.4696
93.5484
69.6078
179682922
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.3120
87.8747
99.4664
36.3431
718299122371212
100.0000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
79.5287
70.4992
91.2109
53.4545
18647804674545
100.0000
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
71.4286
56.8182
96.1538
82.0690
25192511
100.0000
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2004
94.5833
99.9665
44.9492
2951169298011
100.0000
jlack-gatkINDELD16_PLUSHG002compoundhethetalt
95.0565
90.9751
99.5213
25.2782
1754174187199
100.0000
jlack-gatkSNPtimap_l250_m2_e0hetalt
80.0000
80.0000
80.0000
94.0476
41411
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.9368
91.2482
98.9362
35.6164
6366174488
100.0000
jli-customINDELI16_PLUS*hetalt
96.3839
93.3270
99.6479
53.7674
1958140198177
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.2341
94.6563
99.9563
27.5665
4517255457022
100.0000