PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
75.4098
97.1831
61.6071
52.3404
692694343
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
84.2832
73.2558
99.2188
72.2343
1264612711
100.0000
egarrison-hhgaINDELD6_15map_l125_m2_e1homalt
97.2973
97.2973
97.2973
87.7483
3613611
100.0000
egarrison-hhgaSNPtimap_l250_m2_e1homalt
99.5188
99.2099
99.8296
87.5758
175814175833
100.0000
eyeh-varpipeINDELD6_15map_l100_m0_e0homalt
76.3271
79.1667
73.6842
90.0262
195281010
100.0000
gduggal-bwafbINDELD16_PLUS*homalt
85.6946
83.9835
87.4769
60.7791
14212711418203203
100.0000
gduggal-bwafbINDELD6_15map_l125_m0_e0homalt
91.6667
91.6667
91.6667
94.8936
1111111
100.0000
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
78.8136
65.7244
98.4127
78.7640
1869718633
100.0000
gduggal-bwaplatSNP*map_l125_m2_e0homalt
66.1790
49.4619
99.9651
80.4937
85948781858733
100.0000
gduggal-snapfbINDELD6_15map_l100_m2_e1homalt
81.6667
73.1343
92.4528
88.7712
49184944
100.0000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
21.4286
16.6667
30.0000
64.2857
420377
100.0000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
80.0000
100.0000
66.6667
97.1429
20211
100.0000
gduggal-snapplatSNPtimap_l250_m0_e0homalt
87.2580
77.7523
99.4118
93.2647
3399733822
100.0000
gduggal-snapvardINDELD6_15map_l100_m2_e1homalt
57.2597
41.7910
90.9091
76.9231
28393033
100.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.9157
96.0422
95.7895
59.7031
364153641616
100.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2973
100.0000
94.7368
67.7966
3603622
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
100.0000
99.9704
37.6087
67450674522
100.0000
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0972
99.7896
96.4613
40.7376
4743104743174174
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5507
100.0000
97.1429
69.2982
6806822
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9087
99.8904
99.9269
30.4624
27353273522
100.0000
jli-customINDELD1_5map_l100_m2_e0homalt
99.3443
99.1817
99.5074
82.7381
606560633
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5256
99.4746
97.5945
65.3571
56835681414
100.0000
jli-customSNPtiHG002compoundhethomalt
99.9121
99.9324
99.8918
30.7138
73895738988
100.0000
jmaeng-gatkINDELD1_5map_sirenhomalt
99.3571
99.1438
99.5712
81.3141
115810116155
100.0000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.5915
100.0000
97.2222
85.6574
3503511
100.0000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.3066
64633
100.0000
ltrigg-rtg2INDELC16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
0.0000
0.0000
88.8889
94.5783
00811
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e0*
87.5000
79.2453
97.6744
94.2513
42114211
100.0000
mlin-fermikitINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
82.7354
76.8750
89.5631
81.5825
3691113694343
100.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
94.5545
91.3876
97.9487
73.9305
1911819144
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.4350
99.2481
99.6226
83.0346
264226411
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
33.3333
25.0000
50.0000
98.0952
13111
100.0000
egarrison-hhgaINDELD6_15map_l150_m0_e0*
90.4232
87.5000
93.5484
93.6214
2842922
100.0000
eyeh-varpipeINDELD16_PLUSdecoy*
22.2222
16.6667
33.3333
98.5915
15122
100.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
98.8848
21211
100.0000
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
81.9605
70.3226
98.2143
87.3303
1094611022
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0*
79.6826
70.2128
92.1053
89.7849
33143533
100.0000
jli-customINDELI6_15map_l125_m2_e1*
92.0000
86.7925
97.8723
91.0476
4674611
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
98.9445
98.1905
99.7101
62.6893
103119103233
100.0000
jmaeng-gatkINDELI6_15map_l250_m1_e0*
66.6667
57.1429
80.0000
98.7277
43411
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
57.1429
80.0000
99.3990
43411
100.0000
jpowers-varprowlINDELI6_15map_sirenhet
74.0667
79.0210
69.6970
82.9193
113301155050
100.0000
astatham-gatkSNPtvHG002compoundhethet
98.5818
97.4321
99.7590
55.5988
455312045531111
100.0000
ltrigg-rtg2INDELC16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
0.0000
0.0000
75.0000
93.9394
00311
100.0000
asubramanian-gatkINDELI16_PLUSHG002compoundhethet
80.8415
91.4894
72.4138
94.0574
4342188
100.0000
asubramanian-gatkINDELI6_15map_l125_m2_e0het
85.1852
76.6667
95.8333
94.7598
2372311
100.0000
mlin-fermikitINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
84.8330
85.0000
84.6667
87.5519
136241272323
100.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
93.8776
90.5512
97.4576
75.5694
1151211533
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.4359
10111
100.0000