PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
anovak-vgINDELC1_5map_l100_m0_e0homalt
0.0000
100.0000
00000
anovak-vgINDELC6_15map_l250_m2_e1homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC6_15lowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD16_PLUSmap_l125_m1_e0homalt
85.7143
75.0000
100.0000
99.4106
31300
anovak-vgINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5map_l125_m2_e0homalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.6245
00800
ltrigg-rtg1INDELC6_15map_l100_m1_e0homalt
0.0000
100.0000
00000
astatham-gatkINDELD6_15map_l125_m2_e0homalt
98.5915
97.2222
100.0000
89.3617
3513500
ltrigg-rtg1INDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
ltrigg-rtg1INDELI16_PLUSmap_l125_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
asubramanian-gatkINDELC16_PLUSmap_l125_m2_e0homalt
0.0000
100.0000
00000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
99.6099
32300
ltrigg-rtg2INDELC16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
0.0000
0.0000
100.0000
94.7368
00200
ltrigg-rtg2INDELC1_5map_l250_m1_e0homalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
ltrigg-rtg2INDELD6_15segduphomalt
98.9899
98.0000
100.0000
89.5966
4914900
asubramanian-gatkINDELI6_15map_l125_m2_e0homalt
88.8889
80.0000
100.0000
94.6667
1231200
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
82.8571
60600
bgallagher-sentieonINDELC1_5HG002compoundhethomalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELC1_5decoyhomalt
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELC6_15lowcmp_SimpleRepeat_diTR_11to50homalt
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELD6_15decoyhomalt
0.0000
100.0000
00000
mlin-fermikitSNP*decoyhomalt
0.0000
100.0000
00000
cchapple-customINDELC16_PLUSHG002compoundhethomalt
0.0000
100.0000
00000
ndellapenna-hhgaINDELC16_PLUSHG002complexvarhomalt
0.0000
100.0000
00000
cchapple-customINDELC6_15map_l125_m2_e0homalt
0.0000
100.0000
00000
ndellapenna-hhgaINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELC6_15lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSmap_l125_m2_e0homalt
100.0000
100.0000
100.0000
98.0392
30300
ndellapenna-hhgaINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
30300
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ciseli-customINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customINDELC6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
100.0000
00000
ciseli-customINDELI16_PLUStech_badpromotershomalt
66.6667
50.0000
100.0000
75.0000
11100
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.4127
10100
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC1_5map_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
raldana-dualsentieonINDEL*segdupwithalthomalt
0.0000
100.0000
00000