PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
ckim-dragenINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.8421
50500
raldana-dualsentieonINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
raldana-dualsentieonSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
raldana-dualsentieonSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
rpoplin-dv42INDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
83.3333
10100
ckim-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
ckim-isaacSNP*func_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.7143
10100
dgrover-gatkINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3846
50500
dgrover-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
hfeng-pmm1SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
75.7576
2402400
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
hfeng-pmm2SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.3510
40400
hfeng-pmm3SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
jli-customINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jli-customINDELI6_15map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
87.5000
80800
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5842
20200
ltrigg-rtg1INDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
92.4528
1201200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.0952
1301300
cchapple-customINDELI16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
97.8417
30300
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7391
60600
ckim-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.4082
90900
ckim-vqsrINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.7273
7407400
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.2424
10100
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9459
1501500
dgrover-gatkINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400
dgrover-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.4094
119011900
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.9796
20100
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3399
20200
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
32.2581
2102100
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.8073
6806800
jlack-gatkINDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.8370
1901900
jli-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
mlin-fermikitINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8962
10100
ndellapenna-hhgaINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
59.3750
1301300
raldana-dualsentieonINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9969
10100
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.9532
10100
hfeng-pmm2INDEL*decoy*
100.0000
100.0000
100.0000
99.9312
1001000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.6098
90900
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.0588
10200
ndellapenna-hhgaINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
raldana-dualsentieonINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9951
10100
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
85.2381
155015500
hfeng-pmm2INDEL*decoyhet
100.0000
100.0000
100.0000
99.9394
60600