PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85801-85850 / 86044 show all
ckim-isaacINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8742
10100
ckim-isaacINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2063
10100
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10200
ckim-isaacINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
40.0000
60600
ckim-isaacINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
71.4286
20200
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
88.8889
10200
ckim-isaacINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
25.0000
20300
ckim-isaacINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.9002
10100
ckim-isaacINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.3684
10100
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8958
10100
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9874
10100
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9394
10100
ckim-isaacINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
ckim-isaacINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
50.0000
70700
ckim-isaacINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
25.0000
30300
ckim-isaacSNP*func_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
28.5714
50500
ckim-isaacSNP*segduphetalt
100.0000
100.0000
100.0000
93.8053
70700
ckim-isaacSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
27.2727
80800
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNPtisegduphetalt
100.0000
100.0000
100.0000
97.1014
20200
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
31.5789
1301300
egarrison-hhgaINDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
90.9091
10100
egarrison-hhgaINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
95.1220
20200
egarrison-hhgaINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
87.5000
10100
egarrison-hhgaINDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
88.8889
10100
egarrison-hhgaINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
98.0769
10100
egarrison-hhgaINDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
96.8750
10100
egarrison-hhgaINDELD16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
96.2264
40400
egarrison-hhgaINDELD16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
95.7746
30300
egarrison-hhgaINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
80.0000
10100