PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
251-300 / 86044 show all
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
44.1057
39.2068
50.4037
54.9961
15622422174817201273
74.0116
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
65.1163
63.6364
66.6667
99.3328
74633
100.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
82.0253
80.8399
83.2461
66.0293
61614663612870
54.6875
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.3066
64633
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
86.4073
86.7056
86.1111
74.4351
13372051364220118
53.6364
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
87.9887
87.7705
88.2080
78.0159
93313095012770
55.1181
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.7126
30.6097
42.8571
50.7598
73816738611148864
75.2613
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
10000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.1762
50.3884
58.5798
35.8416
10378102181115378866105
77.4157
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4171
52.9438
60.3781
34.2544
966785921031567695257
77.6629
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.6887
53.0607
60.8492
45.3700
11806104441261181146224
76.7069
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
69.0612
65.8068
72.6543
37.5809
1614983911674163014632
73.5121
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.5930
11.9082
33.6634
40.2367
83614102201155
77.1144
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.3676
96.1079
96.6286
54.1432
2437298724047839436
51.9666
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
77.4069
76.4295
78.4096
44.8000
90762799923925441839
72.2877
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
31.7791
28.9773
35.1807
45.7989
357875438807617
76.4560
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
81.1375
80.9173
81.3588
37.8886
32997783365771561
72.7626
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
30.6011
28.0000
33.7349
46.7949
2154285549
89.0909
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5map_l100_m0_e0*
82.9849
83.7775
82.2072
86.7066
72314073015862
39.2405
anovak-vgINDELD1_5map_l100_m1_e0*
84.4511
85.4978
83.4298
83.8652
15802681586315119
37.7778
anovak-vgINDELD1_5map_l100_m2_e0*
84.6007
85.6397
83.5866
84.4811
16402751650324122
37.6543
anovak-vgINDELD1_5map_l100_m2_e1*
84.5768
85.6111
83.5671
84.5427
16602791668328123
37.5000
anovak-vgINDELD1_5map_l125_m0_e0*
80.9550
82.0565
79.8828
90.2159
4078940910343
41.7476
anovak-vgINDELD1_5map_l125_m1_e0*
83.2162
85.2022
81.3206
87.0514
92716193621577
35.8140
anovak-vgINDELD1_5map_l125_m2_e0*
83.4201
85.3893
81.5397
87.6090
97616798522382
36.7713
anovak-vgINDELD1_5map_l125_m2_e1*
83.4613
85.4797
81.5359
87.6226
98916899822683
36.7257
anovak-vgINDELD1_5map_l150_m0_e0*
78.5978
78.8927
78.3051
93.2168
228612316429
45.3125
anovak-vgINDELD1_5map_l150_m1_e0*
81.6618
83.6820
79.7368
89.6132
60011760615460
38.9610
anovak-vgINDELD1_5map_l150_m2_e0*
82.1745
84.1415
80.2974
90.0210
64212164815963
39.6226
anovak-vgINDELD1_5map_l150_m2_e1*
82.1438
84.1902
80.1944
89.9891
65512366016364
39.2638
anovak-vgINDELD1_5map_l250_m0_e0*
66.7485
69.5652
64.1509
98.1232
321434199
47.3684
anovak-vgINDELD1_5map_l250_m1_e0*
72.2457
74.2690
70.3297
96.0219
127441285424
44.4444
anovak-vgINDELD1_5map_l250_m2_e0*
72.9497
74.4565
71.5026
96.2008
137471385524
43.6364
anovak-vgINDELD1_5map_l250_m2_e1*
72.7100
74.5946
70.9184
96.2235
138471395724
42.1053
anovak-vgINDELD1_5map_siren*
87.4723
88.4103
86.5539
80.0641
31204093122485188
38.7629
anovak-vgINDELD1_5segdup*
91.5860
90.4805
92.7189
94.7590
99810510067952
65.8228
anovak-vgINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9942
10100
anovak-vgINDELD1_5tech_badpromoters*
88.2353
78.9474
100.0000
40.0000
1541500
anovak-vgINDELD6_15**
67.2100
61.4480
74.1646
48.0426
16033100591620256444329
76.7009
anovak-vgINDELD6_15HG002complexvar*
72.7472
67.2954
79.1602
52.2024
356817343582943676
71.6861
anovak-vgINDELD6_15HG002compoundhet*
33.7576
27.6935
43.2221
33.8439
25016530270735562531
71.1755
anovak-vgINDELD6_15decoy*
0.0000
0.0000
99.9147
01010
0.0000
anovak-vgINDELD6_15func_cds*
79.0123
74.4186
84.2105
49.3333
32113265
83.3333
anovak-vgINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
30.5317
23.4920
43.5957
47.5189
923300693612111021
84.3105