PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85951-86000 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | homalt | 84.8485 | 73.6842 | 100.0000 | 82.3529 | 14 | 5 | 15 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | * | homalt | 94.4302 | 91.5834 | 97.4597 | 39.6857 | 55342 | 5086 | 55284 | 1441 | 928 | 64.3997 | |
| ghariani-varprowl | INDEL | I1_5 | HG002complexvar | homalt | 95.8338 | 95.7466 | 95.9213 | 42.3182 | 12876 | 572 | 12817 | 545 | 363 | 66.6055 | |
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.8099 | 93.9210 | 22.8907 | 61.1792 | 309 | 20 | 312 | 1051 | 920 | 87.5357 | |
| ghariani-varprowl | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | func_cds | homalt | 97.0213 | 95.7983 | 98.2759 | 29.2683 | 114 | 5 | 114 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9804 | 63.9576 | 79.7357 | 72.0099 | 181 | 102 | 181 | 46 | 33 | 71.7391 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 83.1025 | 78.7956 | 87.9076 | 66.5360 | 2787 | 750 | 2777 | 382 | 238 | 62.3037 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 79.6846 | 71.7362 | 89.6138 | 68.4553 | 2698 | 1063 | 2692 | 312 | 233 | 74.6795 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.9792 | 83.5000 | 90.7609 | 61.7464 | 167 | 33 | 167 | 17 | 13 | 76.4706 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.3912 | 83.6820 | 93.6620 | 67.7273 | 400 | 78 | 399 | 27 | 22 | 81.4815 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.8822 | 83.2370 | 95.3488 | 70.9740 | 288 | 58 | 287 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4138 | 15.8537 | 38.2353 | 86.4000 | 13 | 69 | 13 | 21 | 13 | 61.9048 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 42.4936 | 32.3575 | 61.8768 | 70.3993 | 210 | 439 | 211 | 130 | 89 | 68.4615 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 44.8523 | 34.5009 | 64.0777 | 67.1975 | 197 | 374 | 198 | 111 | 78 | 70.2703 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 65.3595 | 55.1783 | 80.1480 | 73.4881 | 650 | 528 | 650 | 161 | 115 | 71.4286 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 79.6846 | 71.7362 | 89.6138 | 68.4553 | 2698 | 1063 | 2692 | 312 | 233 | 74.6795 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 80.6350 | 85.9929 | 75.9055 | 63.7764 | 485 | 79 | 482 | 153 | 100 | 65.3595 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.6592 | 93.9050 | 91.4460 | 61.1858 | 909 | 59 | 898 | 84 | 35 | 41.6667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 86.2429 | 82.3474 | 90.5252 | 56.5548 | 877 | 188 | 879 | 92 | 63 | 68.4783 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 12.5000 | 100.0000 | 6.6667 | 88.9706 | 1 | 0 | 1 | 14 | 11 | 78.5714 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.7881 | 87.2659 | 92.4603 | 52.8972 | 233 | 34 | 233 | 19 | 12 | 63.1579 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.0874 | 96.1538 | 98.0392 | 75.1523 | 200 | 8 | 200 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.1762 | 96.3320 | 98.0354 | 75.0368 | 499 | 19 | 499 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8889 | 95.6140 | 98.1982 | 81.0903 | 109 | 5 | 109 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.3294 | 96.1877 | 98.4985 | 80.2725 | 328 | 13 | 328 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.3451 | 96.2099 | 98.5075 | 80.6134 | 330 | 13 | 330 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.7759 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |