PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
86001-86044 / 86044 show all
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.0113
70.9589
75.1858
71.6028
6702027429669562209821721
98.2940
gduggal-snapvardINDELD1_5*het
88.4948
98.0268
80.6523
58.4318
8584417281159492781521843
78.5296
jpowers-varprowlINDEL*HG002compoundhethet
23.2624
81.2408
13.5747
59.7974
332676835022229622169
99.4304
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.9821
77.5633
57.4100
52.3175
138213998354302628422200
84.4620
ciseli-customINDEL*HG002compoundhet*
10.2161
9.0332
11.7555
64.4950
27062725034482588322293
86.1299
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
55.4931
52.6341
58.6805
53.0447
2280920526375522644222338
84.4792
ghariani-varprowlINDEL*HG002compoundhethet
24.1441
85.8818
14.0465
61.8818
351657837082269022434
98.8717
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
ciseli-customINDEL**homalt
84.6742
88.5829
81.0959
56.4739
110881142911106442579222639
87.7753
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
gduggal-snapvardINDELD1_5**
87.8248
91.1601
84.7249
55.7284
133771129721600642885822853
79.1912
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
gduggal-bwavardINDEL*HG002compoundhethet
23.2106
89.3014
13.3387
58.9532
365643837932464323937
97.1351
gduggal-bwavardINDEL*HG002compoundhet*
14.6648
14.4226
14.9152
58.8895
43212563943292469523984
97.1209
jpowers-varprowlINDEL*HG002compoundhet*
14.0649
13.8284
14.3095
60.1145
41432581741262470824326
98.4539
ghariani-varprowlINDEL*HG002compoundhet*
14.6445
14.5761
14.7135
73.0382
43672559343342512224561
97.7669
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
79.4795
89.6706
71.3684
71.4189
432844986936863758531016
82.5223
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.9320
73.6508
76.2585
70.2157
69561248861220353799331398
82.6415
ciseli-customINDEL***
83.5453
82.5314
84.5844
60.0787
284352601862847185189036584
70.5030
jpowers-varprowlINDEL**het
88.4014
94.9432
82.7031
60.8976
18431698171843943856537886
98.2393
ghariani-varprowlINDEL**het
89.6326
98.5731
82.1789
64.2989
19136127701914494151738150
91.8901
gduggal-bwavardINDEL**het
89.1538
98.0771
81.7188
63.1804
19040037331901274253338764
91.1386
gduggal-bwavardINDEL***
87.3464
87.1769
87.5166
58.1126
300361441812993414269838856
91.0019
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299
ghariani-varprowlINDEL***
87.2025
87.3272
87.0781
72.0067
300877436633006324461240345
90.4353
gduggal-snapvardINDEL**het
84.4835
93.2561
77.2195
60.6809
181038130922281316730150370
74.8429
gduggal-snapvardINDEL***
83.0264
83.4429
82.6139
57.1178
287491570453277556897651941
75.3030
anovak-vgINDELI1_5*homalt
66.3251
96.0879
50.6397
46.1343
580642364592915779355650
96.2919
anovak-vgINDELI1_5**
54.8287
54.8578
54.7996
53.4671
8265168013848446998259671
85.2662
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167