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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85951-86000 / 86044 show all
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.2778
90.5780
60.1295
57.9997
124591296270331792514535
81.0879
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
64.0892
66.0415
62.2490
58.2196
2074110665298491810214698
81.1954
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.0892
66.0415
62.2490
58.2196
2074110665298491810214698
81.1954
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9341
95.6793
44.7012
53.4443
11980541120511490814726
98.7792
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.2099
96.3623
73.2167
70.3492
320261209478611750814830
84.7041
eyeh-varpipeINDEL*HG002compoundhet*
44.6205
43.3845
45.9289
60.1662
1299816962128161508814950
99.0854
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.4680
83.0514
78.0406
69.2847
5351010920631201776115073
84.8657
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
54.3121
49.8996
59.5807
47.5940
2162421711287001947015099
77.5501
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.3491
46.0834
48.6863
59.5527
1474317249147321552715257
98.2611
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5783
85.5583
89.6959
70.2246
80809136401390871597815625
97.7907
gduggal-snapvardINDEL*HG002compoundhethet
60.5436
68.6950
54.1215
56.4812
28111281241032043215973
78.1764
gduggal-snapvardINDEL*HG002compoundhet*
47.5012
42.0784
54.5285
56.5286
1260517351246302053916069
78.2365
anovak-vgINDEL*HG002complexvar*
72.8155
71.0364
74.6860
53.4026
5465422284560691900416560
87.1395
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
75.9304
73.7693
78.2218
69.0738
4820917142620081726416584
96.0612
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
75.9304
73.7693
78.2218
69.0738
4820917142620081726416584
96.0612
anovak-vgINDEL**het
69.4961
61.0200
80.7068
58.0873
118460756731311723135716629
53.0312
ciseli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.7262
74.1156
73.3408
74.2090
7000024447701712550716983
66.5817
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
58.8469
92.5566
43.1364
52.0545
135291088135501786217494
97.9398
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
46.5132
44.6362
48.5550
51.5466
1691820984168851789017519
97.9262
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
69.0093
82.0142
59.5643
43.2407
102692252287351950717809
91.2954
ciseli-customINDEL*HG002compoundhethomalt
5.5419
79.0087
2.8717
55.4798
5421445591890717855
94.4359
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
57.8592
55.4482
60.4894
43.6279
1773914253300101960217898
91.3070
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.6407
81.6652
39.9361
49.3327
119372680120081806017978
99.5460
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_11to50het
73.0691
85.1079
64.0141
42.9883
134132347356932006518085
90.1321
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.0686
94.1575
43.0321
53.7351
13763854138401832218101
98.7938
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
62.4770
93.3666
46.9454
60.6415
166371182166601882818130
96.2928
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.4833
49.7958
53.2893
59.9443
2157921756215231886618163
96.2737
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_11to50*
65.2231
63.7325
66.7851
42.6875
2332113271407732027818291
90.2012
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
41.5565
39.2117
44.1996
50.5594
1486223040148441874018573
99.1089
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.8916
83.4278
44.3245
56.1428
148662953149401876618665
99.4618
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.3446
44.0478
46.7201
60.8982
1669521207166731901418688
98.2855
anovak-vgSNP***
98.4545
98.3357
98.5736
21.3437
30037965083829873484322718700
43.2600
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
62.8376
94.6349
47.0342
60.4447
16863956169451908218800
98.5222
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
46.9190
44.4652
49.6593
57.4245
1926924066192421950619313
99.0106
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.3682
49.0920
51.7125
68.7841
2127422061212441983719439
97.9936
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
80.6313
97.3607
68.8080
74.0750
469971274470862134520055
93.9564
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
75.4546
74.3184
76.6261
71.7256
7019324256701322139320093
93.9232
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.6453
92.3929
68.4589
73.0930
445993672447162060220414
99.0875
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
72.8701
70.9790
74.8646
68.2103
6703927410796292673520426
76.4017
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
80.8597
97.6155
69.0135
75.3261
471201151472482121420445
96.3750
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
65.7662
77.6219
57.0522
44.3331
113463271317292388520828
87.2012
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.3999
51.2849
57.9178
44.7526
1943818464330232399420921
87.1926
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.4538
73.6260
75.3005
77.0932
6953924910694702278721717
95.3043