PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68751-68800 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9821 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.7593 | 99.0050 | 98.5149 | 88.5292 | 199 | 2 | 199 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | * | 98.7701 | 97.6843 | 99.8804 | 65.6662 | 20037 | 475 | 20041 | 24 | 7 | 29.1667 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | het | 98.2167 | 96.6307 | 99.8556 | 61.9797 | 12447 | 434 | 12450 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 69.0476 | 13 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | homalt | 99.7039 | 99.4879 | 99.9209 | 70.3819 | 7577 | 39 | 7578 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8741 | 96.4613 | 99.3289 | 82.5609 | 736 | 27 | 740 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7334 | 96.3035 | 99.2063 | 80.3967 | 495 | 19 | 500 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.7539 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5386 | 97.5207 | 99.5781 | 82.8261 | 236 | 6 | 236 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | * | 98.7380 | 97.6422 | 99.8587 | 65.4099 | 31101 | 751 | 31104 | 44 | 9 | 20.4545 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | het | 98.1544 | 96.5480 | 99.8151 | 61.4966 | 19438 | 695 | 19439 | 36 | 2 | 5.5556 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | homalt | 99.7345 | 99.5384 | 99.9314 | 70.4233 | 11645 | 54 | 11647 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6462 | 96.1464 | 99.1935 | 86.0635 | 499 | 20 | 492 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | het | 96.5090 | 94.1748 | 98.9619 | 84.5620 | 291 | 18 | 286 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1591 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2481 | 99.0050 | 99.4924 | 85.2434 | 199 | 2 | 196 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | het | 98.0436 | 96.4010 | 99.7431 | 60.6061 | 6991 | 261 | 6989 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7915 | 99.6326 | 99.9509 | 70.3193 | 4068 | 15 | 4069 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 92.5267 | 21 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 91.8519 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.8551 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 87.6755 | 81 | 1 | 79 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 88.2507 | 46 | 0 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6606 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 82.5503 | 27 | 1 | 26 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.6452 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | * | 66.8704 | 54.9148 | 85.4806 | 82.9140 | 419 | 344 | 418 | 71 | 63 | 88.7324 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | het | 64.6730 | 48.4436 | 97.2549 | 83.3442 | 249 | 265 | 248 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 96.3415 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.6131 | 69.0083 | 72.2944 | 81.5052 | 167 | 75 | 167 | 64 | 59 | 92.1875 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 81.4815 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | homalt | 74.0741 | 71.4286 | 76.9231 | 88.9831 | 20 | 8 | 20 | 6 | 6 | 100.0000 | |