PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68501-68550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | * | 82.6087 | 76.0000 | 90.4762 | 94.6154 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | het | 78.5714 | 73.3333 | 84.6154 | 93.9252 | 11 | 4 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 83.3333 | 71.4286 | 100.0000 | 96.1832 | 5 | 2 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | * | 99.1376 | 98.9177 | 99.3584 | 75.0879 | 20290 | 222 | 20286 | 131 | 93 | 70.9924 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | het | 99.0005 | 98.8200 | 99.1816 | 75.9652 | 12729 | 152 | 12725 | 105 | 68 | 64.7619 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.3134 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | homalt | 99.3810 | 99.0809 | 99.6830 | 73.3835 | 7546 | 70 | 7546 | 24 | 23 | 95.8333 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | * | 98.9506 | 98.8287 | 99.0728 | 74.8529 | 11222 | 133 | 11220 | 105 | 61 | 58.0952 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | het | 98.7872 | 98.8555 | 98.7190 | 75.1931 | 7169 | 83 | 7167 | 93 | 49 | 52.6882 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | homalt | 99.2738 | 98.7754 | 99.7773 | 74.0315 | 4033 | 50 | 4033 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 92.0821 | 81 | 1 | 81 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.7900 | 46 | 0 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.5263 | 27 | 1 | 27 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0541 | 97.8599 | 98.2490 | 88.2809 | 503 | 11 | 505 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.3333 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9733 | 99.5868 | 98.3673 | 88.4051 | 241 | 1 | 241 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | * | 99.0736 | 98.8855 | 99.2624 | 74.9915 | 31497 | 355 | 31491 | 234 | 152 | 64.9573 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | het | 98.9235 | 98.8328 | 99.0144 | 75.6918 | 19898 | 235 | 19892 | 198 | 117 | 59.0909 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | homalt | 99.3437 | 98.9743 | 99.7158 | 73.6127 | 11579 | 120 | 11579 | 33 | 32 | 96.9697 | |
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1366 | 96.3415 | 100.0000 | 89.8718 | 79 | 3 | 79 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.7778 | 95.6522 | 100.0000 | 91.0751 | 44 | 2 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.7097 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5556 | 28 | 0 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8940 | 97.3788 | 98.4148 | 87.6287 | 743 | 20 | 745 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7646 | 97.6654 | 97.8641 | 87.4604 | 502 | 12 | 504 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 97.3958 | 5 | 2 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5386 | 97.5207 | 99.5781 | 86.9780 | 236 | 6 | 236 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | * | 97.3214 | 96.6619 | 97.9899 | 88.6072 | 1361 | 47 | 1365 | 28 | 4 | 14.2857 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | het | 96.9552 | 96.4680 | 97.4473 | 88.6581 | 874 | 32 | 878 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.3574 | 18 | 3 | 18 | 0 | 0 | ||