PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
jli-customSNP***
99.9382
99.9603
99.9160
18.2994
3053407121230533022566212
8.2619
ckim-dragenSNP***
99.8268
99.9524
99.7015
21.8489
3053166145330537319143533
5.8296
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
jlack-gatkSNP***
99.7200
99.9393
99.5016
23.6335
30527651854305261215290548
3.5840
hfeng-pmm3SNP***
99.9548
99.9339
99.9756
18.3516
30526012018305246074476
10.2151
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
raldana-dualsentieonSNP***
99.9260
99.9131
99.9389
18.4181
305196526543051826186797
5.1955
ltrigg-rtg2SNP***
99.8749
99.8935
99.8562
17.0058
3051374325230515314395283
6.4391
ltrigg-rtg1SNP***
99.8754
99.8921
99.8587
17.5113
3051330329630515184317267
6.1849
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
ghariani-varprowlSNP***
99.3496
99.8685
98.8361
25.2137
305057740163051086359302639
7.3448
gduggal-bwafbSNP***
99.7820
99.8619
99.7021
21.9848
3050417421730506569115775
8.5025
egarrison-hhgaSNP***
99.8985
99.8365
99.9607
18.3304
3049624499530496771199305
25.4379
ndellapenna-hhgaSNP***
99.8818
99.8118
99.9519
18.1821
3048871574830489191468467
31.8120
gduggal-snapfbSNP***
99.2501
99.8026
98.7037
23.6262
304860460303049548400492047
5.1112
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
ckim-gatkSNP***
99.6466
99.4788
99.8150
23.5123
30386981592130385525632250
4.4389
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
qzeng-customSNP***
99.4966
99.2413
99.7533
22.5407
303145823176301298374521530
20.5314
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
gduggal-bwavardSNP***
99.3249
99.0431
99.6083
22.9016
3025405292293004827118173477
29.4237
gduggal-snapvardSNP***
99.0871
98.9341
99.2406
23.7872
3022073325603000636229623691
16.0744
ciseli-customSNP***
97.7648
98.8356
96.7169
21.5138
301906535569300607210204111838
11.6012
gduggal-snapplatSNP***
99.0030
98.6815
99.3266
26.8746
3014360402743015151204422819
13.7902
ckim-vqsrSNP***
99.2866
98.6511
99.9303
23.6837
30134154120430132722101144
6.8539
anovak-vgSNP***
98.4545
98.3357
98.5736
21.3437
30037965083829873484322718700
43.2600
mlin-fermikitSNP***
98.8629
98.2311
99.5029
16.3803
30006025403230005271499012200
81.3876
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779
asubramanian-gatkSNP***
98.9379
97.9985
99.8954
21.0150
29934806113929933433133150
4.7877
ckim-isaacSNP***
98.5357
97.1616
99.9494
15.9907
29679308670429685841504880
58.5106
bgallagher-sentieonSNPti**
99.9476
99.9680
99.9272
17.4519
208484466720847811519117
7.7024
eyeh-varpipeSNPti**
99.7598
99.9651
99.5553
19.0734
208479172720610839206307
3.3348
dgrover-gatkSNPti**
99.9570
99.9639
99.9500
17.7617
208475975220846961042126
12.0921
jli-customSNPti**
99.9536
99.9637
99.9435
16.8976
208475575620847161179130
11.0263
ckim-dragenSNPti**
99.8327
99.9538
99.7120
20.2602
208454796420848166022378
6.2770
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
hfeng-pmm3SNPti**
99.9596
99.9417
99.9775
17.0194
20842951216208423646946
9.8081
jlack-gatkSNPti**
99.7777
99.9393
99.6165
21.7408
2084246126520841828024364
4.5364
hfeng-pmm2SNPti**
99.9484
99.9340
99.9629
17.4396
20841351376208407777472
9.3023
hfeng-pmm1SNPti**
99.9548
99.9307
99.9789
16.7547
20840651446208400744067
15.2273
raldana-dualsentieonSNPti**
99.9357
99.9205
99.9510
17.0225
208385316582083794102254
5.2838
ltrigg-rtg2SNPti**
99.8963
99.8985
99.8940
15.8136
2083396211620833012210180
8.1448
ltrigg-rtg1SNPti**
99.8970
99.8948
99.8992
16.3223
2083318219420832412102174
8.2778
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
ghariani-varprowlSNPti**
99.5372
99.8784
99.1982
22.5770
208295725362083186168371291
7.6676
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083